Hb_001892_080

Information

Type -
Description -
Location Contig1892: 83310-83642
Sequence    

Annotation

kegg
ID tcc:TCM_010891
description Clavata3/esr-related 16, putative
nr
ID XP_007045160.1
description Clavata3/esr-related 16, putative [Theobroma cacao]
swissprot
ID Q8S8M2
description CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana GN=CLE16 PE=2 SV=1
trembl
ID A0A061E9D9
description Clavata3/esr-related 16, putative OS=Theobroma cacao GN=TCM_010891 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001892_080 0.0 - - Clavata3/esr-related 16, putative [Theobroma cacao]
2 Hb_001416_130 0.0580912731 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000139_310 0.058848212 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
4 Hb_001269_030 0.0635941021 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
5 Hb_000307_150 0.0640186758 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
6 Hb_001028_040 0.067141591 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
7 Hb_000589_340 0.0688133207 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_000545_180 0.0696101536 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
9 Hb_006570_030 0.0699381973 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
10 Hb_002368_060 0.0713685008 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029079_010 0.0747957929 - - receptor-kinase, putative [Ricinus communis]
12 Hb_002871_180 0.0765923571 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
13 Hb_000101_330 0.0782952982 - - -
14 Hb_005000_120 0.0858038431 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
15 Hb_007477_060 0.0881646704 - - unknown [Medicago truncatula]
16 Hb_000450_050 0.088790459 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
17 Hb_000352_230 0.0952021543 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_001322_120 0.0954517729 - - nutrient reservoir, putative [Ricinus communis]
19 Hb_000116_090 0.0955828751 - - catalase [Hevea brasiliensis]
20 Hb_001621_090 0.0957473177 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]

Gene co-expression network

sample Hb_001892_080 Hb_001892_080 Hb_001416_130 Hb_001416_130 Hb_001892_080--Hb_001416_130 Hb_000139_310 Hb_000139_310 Hb_001892_080--Hb_000139_310 Hb_001269_030 Hb_001269_030 Hb_001892_080--Hb_001269_030 Hb_000307_150 Hb_000307_150 Hb_001892_080--Hb_000307_150 Hb_001028_040 Hb_001028_040 Hb_001892_080--Hb_001028_040 Hb_000589_340 Hb_000589_340 Hb_001892_080--Hb_000589_340 Hb_001416_130--Hb_000139_310 Hb_001416_130--Hb_000589_340 Hb_006570_030 Hb_006570_030 Hb_001416_130--Hb_006570_030 Hb_029079_010 Hb_029079_010 Hb_001416_130--Hb_029079_010 Hb_000545_180 Hb_000545_180 Hb_001416_130--Hb_000545_180 Hb_000139_310--Hb_006570_030 Hb_000139_310--Hb_000589_340 Hb_000139_310--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_000139_310--Hb_002368_060 Hb_001292_030 Hb_001292_030 Hb_000139_310--Hb_001292_030 Hb_001269_030--Hb_000545_180 Hb_009771_090 Hb_009771_090 Hb_001269_030--Hb_009771_090 Hb_000826_010 Hb_000826_010 Hb_001269_030--Hb_000826_010 Hb_000373_160 Hb_000373_160 Hb_001269_030--Hb_000373_160 Hb_001269_030--Hb_001028_040 Hb_000116_090 Hb_000116_090 Hb_000307_150--Hb_000116_090 Hb_002871_180 Hb_002871_180 Hb_000307_150--Hb_002871_180 Hb_000334_010 Hb_000334_010 Hb_000307_150--Hb_000334_010 Hb_000307_150--Hb_001269_030 Hb_007477_060 Hb_007477_060 Hb_000307_150--Hb_007477_060 Hb_001028_040--Hb_002368_060 Hb_001028_040--Hb_006570_030 Hb_002785_030 Hb_002785_030 Hb_001028_040--Hb_002785_030 Hb_001322_120 Hb_001322_120 Hb_001028_040--Hb_001322_120 Hb_001028_040--Hb_001292_030 Hb_000450_050 Hb_000450_050 Hb_000589_340--Hb_000450_050 Hb_000589_340--Hb_006570_030 Hb_005276_080 Hb_005276_080 Hb_000589_340--Hb_005276_080 Hb_002785_040 Hb_002785_040 Hb_000589_340--Hb_002785_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.221754 1.26089 0.343185 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.62045

CAGE analysis