Hb_001892_150

Information

Type -
Description -
Location Contig1892: 169040-170416
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18777: 169766-170683 , PASA_asmbl_18778: 169799-170683 , PASA_asmbl_18779: 169749-170681
cDNA
(Sanger)
(ID:Location)		 011_E09.ab1: 169749-170681 , 044_P14.ab1: 169789-170457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001892_150 0.0 - - -
2 Hb_043061_010 0.1000313727 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
3 Hb_005450_010 0.1129851797 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
4 Hb_029879_080 0.1283670279 - - unknown [Populus trichocarpa]
5 Hb_003327_060 0.1351622938 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
6 Hb_115919_020 0.1368932004 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
7 Hb_134789_010 0.1381832968 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
8 Hb_000284_010 0.1415386596 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_002301_020 0.1445245456 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
10 Hb_000914_060 0.1448187706 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
11 Hb_000078_030 0.1477406299 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010578_090 0.1548621297 - - HEV2.1 [Hevea brasiliensis]
13 Hb_000997_260 0.1580288077 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
14 Hb_002298_040 0.1602410886 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
15 Hb_007317_220 0.1613301077 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
16 Hb_005016_130 0.1639422945 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
17 Hb_000193_230 0.1651700153 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
18 Hb_001741_080 0.1659836293 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
19 Hb_012305_060 0.1660367181 - - protein translocase, putative [Ricinus communis]
20 Hb_000155_070 0.1684251724 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_001892_150 Hb_001892_150 Hb_043061_010 Hb_043061_010 Hb_001892_150--Hb_043061_010 Hb_005450_010 Hb_005450_010 Hb_001892_150--Hb_005450_010 Hb_029879_080 Hb_029879_080 Hb_001892_150--Hb_029879_080 Hb_003327_060 Hb_003327_060 Hb_001892_150--Hb_003327_060 Hb_115919_020 Hb_115919_020 Hb_001892_150--Hb_115919_020 Hb_134789_010 Hb_134789_010 Hb_001892_150--Hb_134789_010 Hb_043061_010--Hb_115919_020 Hb_000284_010 Hb_000284_010 Hb_043061_010--Hb_000284_010 Hb_000444_030 Hb_000444_030 Hb_043061_010--Hb_000444_030 Hb_043061_010--Hb_134789_010 Hb_000184_180 Hb_000184_180 Hb_043061_010--Hb_000184_180 Hb_001631_080 Hb_001631_080 Hb_005450_010--Hb_001631_080 Hb_005450_010--Hb_000284_010 Hb_005450_010--Hb_043061_010 Hb_005450_010--Hb_029879_080 Hb_001741_080 Hb_001741_080 Hb_005450_010--Hb_001741_080 Hb_010578_090 Hb_010578_090 Hb_029879_080--Hb_010578_090 Hb_002298_040 Hb_002298_040 Hb_029879_080--Hb_002298_040 Hb_005016_130 Hb_005016_130 Hb_029879_080--Hb_005016_130 Hb_029879_080--Hb_115919_020 Hb_029879_080--Hb_000284_010 Hb_002221_080 Hb_002221_080 Hb_029879_080--Hb_002221_080 Hb_000914_060 Hb_000914_060 Hb_003327_060--Hb_000914_060 Hb_138413_010 Hb_138413_010 Hb_003327_060--Hb_138413_010 Hb_000155_070 Hb_000155_070 Hb_003327_060--Hb_000155_070 Hb_000933_140 Hb_000933_140 Hb_003327_060--Hb_000933_140 Hb_004968_060 Hb_004968_060 Hb_003327_060--Hb_004968_060 Hb_005730_020 Hb_005730_020 Hb_003327_060--Hb_005730_020 Hb_115919_020--Hb_000284_010 Hb_115919_020--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_115919_020--Hb_000078_030 Hb_000787_070 Hb_000787_070 Hb_115919_020--Hb_000787_070 Hb_000193_230 Hb_000193_230 Hb_115919_020--Hb_000193_230 Hb_115919_020--Hb_002298_040 Hb_006787_040 Hb_006787_040 Hb_134789_010--Hb_006787_040 Hb_134789_010--Hb_115919_020 Hb_000442_030 Hb_000442_030 Hb_134789_010--Hb_000442_030 Hb_007317_220 Hb_007317_220 Hb_134789_010--Hb_007317_220 Hb_000849_040 Hb_000849_040 Hb_134789_010--Hb_000849_040 Hb_008408_030 Hb_008408_030 Hb_134789_010--Hb_008408_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
419.759 1.18425 0.195449 1.86418 186.281 564.702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
502.967 324.971 196.104 12.3542 1.33334

CAGE analysis