Hb_001894_020

Information

Type -
Description -
Location Contig1894: 26029-32517
Sequence    

Annotation

kegg
ID tcc:TCM_010347
description Polygalacturonase 2
nr
ID XP_012085374.1
description PREDICTED: probable polygalacturonase non-catalytic subunit JP630 [Jatropha curcas]
swissprot
ID P92990
description Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2
trembl
ID A0A067JRQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18801: 26477-26623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_020 0.0 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP630 [Jatropha curcas]
2 Hb_000005_020 0.1264284962 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
3 Hb_011994_020 0.155599121 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
4 Hb_000408_060 0.1604530628 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
5 Hb_132381_010 0.1671720808 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_015978_020 0.175561826 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
7 Hb_000789_160 0.1760317718 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
8 Hb_000331_630 0.1761051294 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
9 Hb_049453_010 0.1774786691 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_000398_070 0.1794404119 - - hypothetical protein VITISV_011880 [Vitis vinifera]
11 Hb_000614_300 0.180864995 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
12 Hb_007760_020 0.1815632696 - - PREDICTED: expansin-A1 [Populus euphratica]
13 Hb_001221_450 0.1845667356 - - conserved hypothetical protein [Ricinus communis]
14 Hb_057862_010 0.1850198879 - - protein binding protein, putative [Ricinus communis]
15 Hb_031984_020 0.1853668913 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001584_270 0.1865542291 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000997_080 0.1881670162 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
18 Hb_005116_150 0.1890200452 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
19 Hb_002014_130 0.1902213836 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005291_020 0.1902595428 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001894_020 Hb_001894_020 Hb_000005_020 Hb_000005_020 Hb_001894_020--Hb_000005_020 Hb_011994_020 Hb_011994_020 Hb_001894_020--Hb_011994_020 Hb_000408_060 Hb_000408_060 Hb_001894_020--Hb_000408_060 Hb_132381_010 Hb_132381_010 Hb_001894_020--Hb_132381_010 Hb_015978_020 Hb_015978_020 Hb_001894_020--Hb_015978_020 Hb_000789_160 Hb_000789_160 Hb_001894_020--Hb_000789_160 Hb_005653_050 Hb_005653_050 Hb_000005_020--Hb_005653_050 Hb_001373_170 Hb_001373_170 Hb_000005_020--Hb_001373_170 Hb_004225_010 Hb_004225_010 Hb_000005_020--Hb_004225_010 Hb_001308_010 Hb_001308_010 Hb_000005_020--Hb_001308_010 Hb_001454_420 Hb_001454_420 Hb_000005_020--Hb_001454_420 Hb_008008_040 Hb_008008_040 Hb_000005_020--Hb_008008_040 Hb_011930_180 Hb_011930_180 Hb_011994_020--Hb_011930_180 Hb_000903_040 Hb_000903_040 Hb_011994_020--Hb_000903_040 Hb_000964_040 Hb_000964_040 Hb_011994_020--Hb_000964_040 Hb_001754_130 Hb_001754_130 Hb_011994_020--Hb_001754_130 Hb_000309_060 Hb_000309_060 Hb_011994_020--Hb_000309_060 Hb_003090_220 Hb_003090_220 Hb_000408_060--Hb_003090_220 Hb_002014_130 Hb_002014_130 Hb_000408_060--Hb_002014_130 Hb_001818_010 Hb_001818_010 Hb_000408_060--Hb_001818_010 Hb_006153_140 Hb_006153_140 Hb_000408_060--Hb_006153_140 Hb_003680_240 Hb_003680_240 Hb_000408_060--Hb_003680_240 Hb_000866_130 Hb_000866_130 Hb_000408_060--Hb_000866_130 Hb_031984_020 Hb_031984_020 Hb_132381_010--Hb_031984_020 Hb_015175_070 Hb_015175_070 Hb_132381_010--Hb_015175_070 Hb_000531_030 Hb_000531_030 Hb_132381_010--Hb_000531_030 Hb_002471_130 Hb_002471_130 Hb_132381_010--Hb_002471_130 Hb_005295_030 Hb_005295_030 Hb_132381_010--Hb_005295_030 Hb_004899_230 Hb_004899_230 Hb_132381_010--Hb_004899_230 Hb_015978_020--Hb_003680_240 Hb_003685_070 Hb_003685_070 Hb_015978_020--Hb_003685_070 Hb_014834_100 Hb_014834_100 Hb_015978_020--Hb_014834_100 Hb_140627_040 Hb_140627_040 Hb_015978_020--Hb_140627_040 Hb_001433_230 Hb_001433_230 Hb_015978_020--Hb_001433_230 Hb_005357_170 Hb_005357_170 Hb_015978_020--Hb_005357_170 Hb_000331_630 Hb_000331_630 Hb_000789_160--Hb_000331_630 Hb_000614_300 Hb_000614_300 Hb_000789_160--Hb_000614_300 Hb_003427_030 Hb_003427_030 Hb_000789_160--Hb_003427_030 Hb_000207_060 Hb_000207_060 Hb_000789_160--Hb_000207_060 Hb_002263_050 Hb_002263_050 Hb_000789_160--Hb_002263_050 Hb_000163_170 Hb_000163_170 Hb_000789_160--Hb_000163_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0223427 0.133024 0.00923012 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0070137 0.0372664

CAGE analysis