Hb_001894_040

Information

Type -
Description -
Location Contig1894: 41971-49020
Sequence    

Annotation

kegg
ID rcu:RCOM_0528440
description carbonic anhydrase, putative (EC:4.2.1.1)
nr
ID XP_012085380.1
description PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
swissprot
ID P27141
description Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067JRK3
description Carbonic anhydrase OS=Jatropha curcas GN=JCGZ_17744 PE=3 SV=1
Gene Ontology
ID GO:0004089
description carbonic anhydrase 2 isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18806: 42631-43042 , PASA_asmbl_18807: 44483-48883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_040 0.0 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
2 Hb_000085_230 0.0835463849 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
3 Hb_008226_120 0.0873191183 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000579_180 0.0876438572 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
5 Hb_046101_010 0.08999334 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
6 Hb_001862_060 0.0926125666 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
7 Hb_001636_010 0.1018370106 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
8 Hb_000008_080 0.1023973188 - - conserved hypothetical protein [Ricinus communis]
9 Hb_107543_010 0.1039492128 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
10 Hb_074312_020 0.104687999 - - cytochrome P450, putative [Ricinus communis]
11 Hb_038777_010 0.1049827418 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
12 Hb_009581_040 0.1051266721 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
13 Hb_020285_010 0.1058609715 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
14 Hb_075449_040 0.1136151395 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
15 Hb_000836_390 0.1143043236 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
16 Hb_001421_010 0.1143385799 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
17 Hb_000280_110 0.1145265583 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_003376_200 0.1167680901 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_006316_030 0.1167935561 - - aldehyde oxidase, putative [Ricinus communis]
20 Hb_000489_020 0.1174060789 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001894_040 Hb_001894_040 Hb_000085_230 Hb_000085_230 Hb_001894_040--Hb_000085_230 Hb_008226_120 Hb_008226_120 Hb_001894_040--Hb_008226_120 Hb_000579_180 Hb_000579_180 Hb_001894_040--Hb_000579_180 Hb_046101_010 Hb_046101_010 Hb_001894_040--Hb_046101_010 Hb_001862_060 Hb_001862_060 Hb_001894_040--Hb_001862_060 Hb_001636_010 Hb_001636_010 Hb_001894_040--Hb_001636_010 Hb_000085_230--Hb_000579_180 Hb_001514_210 Hb_001514_210 Hb_000085_230--Hb_001514_210 Hb_012753_200 Hb_012753_200 Hb_000085_230--Hb_012753_200 Hb_000008_080 Hb_000008_080 Hb_000085_230--Hb_000008_080 Hb_000836_390 Hb_000836_390 Hb_000085_230--Hb_000836_390 Hb_038777_010 Hb_038777_010 Hb_008226_120--Hb_038777_010 Hb_008226_120--Hb_001862_060 Hb_008406_020 Hb_008406_020 Hb_008226_120--Hb_008406_020 Hb_009581_040 Hb_009581_040 Hb_008226_120--Hb_009581_040 Hb_012807_060 Hb_012807_060 Hb_008226_120--Hb_012807_060 Hb_000579_180--Hb_012753_200 Hb_003807_020 Hb_003807_020 Hb_000579_180--Hb_003807_020 Hb_010926_010 Hb_010926_010 Hb_000579_180--Hb_010926_010 Hb_000579_180--Hb_012807_060 Hb_020285_010 Hb_020285_010 Hb_046101_010--Hb_020285_010 Hb_001369_070 Hb_001369_070 Hb_046101_010--Hb_001369_070 Hb_074312_020 Hb_074312_020 Hb_046101_010--Hb_074312_020 Hb_002276_100 Hb_002276_100 Hb_046101_010--Hb_002276_100 Hb_000280_110 Hb_000280_110 Hb_046101_010--Hb_000280_110 Hb_001862_060--Hb_074312_020 Hb_003439_020 Hb_003439_020 Hb_001862_060--Hb_003439_020 Hb_001862_060--Hb_038777_010 Hb_134017_010 Hb_134017_010 Hb_001862_060--Hb_134017_010 Hb_001862_060--Hb_009581_040 Hb_010417_100 Hb_010417_100 Hb_001636_010--Hb_010417_100 Hb_001636_010--Hb_020285_010 Hb_007894_030 Hb_007894_030 Hb_001636_010--Hb_007894_030 Hb_001421_010 Hb_001421_010 Hb_001636_010--Hb_001421_010 Hb_001636_010--Hb_038777_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181506 51.0867 14.7885 17.4905 0.358893 1.11477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0772877 0.0607975 0 48.3087 12.9887

CAGE analysis