Hb_001894_050

Information

Type -
Description -
Location Contig1894: 51023-57434
Sequence    

Annotation

kegg
ID rcu:RCOM_0528130
description amsh, putative
nr
ID XP_012085386.1
description PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
swissprot
ID Q6NKP9
description AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2 PE=2 SV=1
trembl
ID B9SHA7
description Amsh, putative OS=Ricinus communis GN=RCOM_0528130 PE=4 SV=1
Gene Ontology
ID GO:0070536
description amsh-like ubiquitin thioesterase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18808: 53048-57415
cDNA
(Sanger)
(ID:Location)		 008_D01.ab1: 53048-56018 , 038_J20.ab1: 55629-57272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_050 0.0 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
2 Hb_001817_160 0.1035731952 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001564_080 0.1086336705 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
4 Hb_189208_020 0.1097039038 - - LRX2, putative [Ricinus communis]
5 Hb_000451_070 0.1169188752 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_000915_160 0.1212157082 - - PREDICTED: histone H1 [Jatropha curcas]
7 Hb_002042_130 0.1268173081 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
8 Hb_115241_010 0.1274114946 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
9 Hb_000976_310 0.1294183155 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
10 Hb_005653_060 0.1332079684 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
11 Hb_002486_040 0.1339146799 - - -
12 Hb_000975_360 0.1363950228 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001439_100 0.1384822463 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
14 Hb_000002_340 0.1387700671 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
15 Hb_001153_180 0.1388003593 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
16 Hb_000189_560 0.1391676504 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
17 Hb_003494_200 0.1413457128 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
18 Hb_005551_050 0.1436833953 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
19 Hb_005116_060 0.1447746592 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
20 Hb_004994_140 0.1456236753 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001894_050 Hb_001894_050 Hb_001817_160 Hb_001817_160 Hb_001894_050--Hb_001817_160 Hb_001564_080 Hb_001564_080 Hb_001894_050--Hb_001564_080 Hb_189208_020 Hb_189208_020 Hb_001894_050--Hb_189208_020 Hb_000451_070 Hb_000451_070 Hb_001894_050--Hb_000451_070 Hb_000915_160 Hb_000915_160 Hb_001894_050--Hb_000915_160 Hb_002042_130 Hb_002042_130 Hb_001894_050--Hb_002042_130 Hb_010997_080 Hb_010997_080 Hb_001817_160--Hb_010997_080 Hb_000976_310 Hb_000976_310 Hb_001817_160--Hb_000976_310 Hb_000189_560 Hb_000189_560 Hb_001817_160--Hb_000189_560 Hb_005306_190 Hb_005306_190 Hb_001817_160--Hb_005306_190 Hb_001856_230 Hb_001856_230 Hb_001817_160--Hb_001856_230 Hb_005653_060 Hb_005653_060 Hb_001564_080--Hb_005653_060 Hb_005551_050 Hb_005551_050 Hb_001564_080--Hb_005551_050 Hb_001564_080--Hb_189208_020 Hb_001564_080--Hb_001817_160 Hb_115241_010 Hb_115241_010 Hb_001564_080--Hb_115241_010 Hb_002097_200 Hb_002097_200 Hb_189208_020--Hb_002097_200 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_000402_210 Hb_000402_210 Hb_000451_070--Hb_000402_210 Hb_088753_010 Hb_088753_010 Hb_000451_070--Hb_088753_010 Hb_000451_070--Hb_189208_020 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180 Hb_003185_080 Hb_003185_080 Hb_000915_160--Hb_003185_080 Hb_002486_040 Hb_002486_040 Hb_000915_160--Hb_002486_040 Hb_000002_340 Hb_000002_340 Hb_000915_160--Hb_000002_340 Hb_001195_330 Hb_001195_330 Hb_000915_160--Hb_001195_330 Hb_000221_210 Hb_000221_210 Hb_000915_160--Hb_000221_210 Hb_003050_220 Hb_003050_220 Hb_000915_160--Hb_003050_220 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_000302_260 Hb_000302_260 Hb_002042_130--Hb_000302_260 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.37424 28.9436 7.71894 6.81938 7.22627 12.2957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.5685 21.9767 12.051 13.1725 8.0598

CAGE analysis