Hb_001894_060

Information

Type -
Description -
Location Contig1894: 58406-59269
Sequence    

Annotation

kegg
ID rcu:RCOM_0528120
description hypothetical protein
nr
ID XP_012085387.1
description PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17746 PE=4 SV=1
Gene Ontology
ID GO:0006950
description at1g70420 f17o7_4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_060 0.0 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
2 Hb_007441_150 0.0937382522 - - Ankyrin repeat family protein [Theobroma cacao]
3 Hb_158926_010 0.1077940565 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_000808_090 0.1131381982 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
5 Hb_029622_080 0.1148604032 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
6 Hb_032260_100 0.1167244841 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
7 Hb_101058_020 0.1177464332 - - DWNN domain isoform 2 [Theobroma cacao]
8 Hb_000665_090 0.123874199 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000127_200 0.1245127326 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
10 Hb_096930_010 0.1272902448 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
11 Hb_004079_040 0.1280485352 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
12 Hb_000024_020 0.1336123828 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
13 Hb_005656_200 0.1354543999 - - Cation transport protein chaC, putative [Ricinus communis]
14 Hb_000925_110 0.1367775273 - - Spotted leaf protein, putative [Ricinus communis]
15 Hb_109591_010 0.1368899591 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_000221_280 0.1369494528 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
17 Hb_000988_020 0.137377105 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
18 Hb_032920_040 0.1398339313 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
19 Hb_000656_350 0.1409162224 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
20 Hb_000827_090 0.1418653173 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]

Gene co-expression network

sample Hb_001894_060 Hb_001894_060 Hb_007441_150 Hb_007441_150 Hb_001894_060--Hb_007441_150 Hb_158926_010 Hb_158926_010 Hb_001894_060--Hb_158926_010 Hb_000808_090 Hb_000808_090 Hb_001894_060--Hb_000808_090 Hb_029622_080 Hb_029622_080 Hb_001894_060--Hb_029622_080 Hb_032260_100 Hb_032260_100 Hb_001894_060--Hb_032260_100 Hb_101058_020 Hb_101058_020 Hb_001894_060--Hb_101058_020 Hb_000024_020 Hb_000024_020 Hb_007441_150--Hb_000024_020 Hb_000988_020 Hb_000988_020 Hb_007441_150--Hb_000988_020 Hb_007441_150--Hb_032260_100 Hb_000805_150 Hb_000805_150 Hb_007441_150--Hb_000805_150 Hb_007441_150--Hb_029622_080 Hb_158926_010--Hb_101058_020 Hb_158926_010--Hb_000808_090 Hb_022137_020 Hb_022137_020 Hb_158926_010--Hb_022137_020 Hb_004079_040 Hb_004079_040 Hb_158926_010--Hb_004079_040 Hb_000665_090 Hb_000665_090 Hb_158926_010--Hb_000665_090 Hb_000808_090--Hb_029622_080 Hb_000808_090--Hb_000665_090 Hb_000808_090--Hb_032260_100 Hb_000656_350 Hb_000656_350 Hb_000808_090--Hb_000656_350 Hb_000627_130 Hb_000627_130 Hb_000808_090--Hb_000627_130 Hb_124953_010 Hb_124953_010 Hb_000808_090--Hb_124953_010 Hb_029622_080--Hb_032260_100 Hb_029622_080--Hb_000656_350 Hb_000221_280 Hb_000221_280 Hb_029622_080--Hb_000221_280 Hb_000571_030 Hb_000571_030 Hb_029622_080--Hb_000571_030 Hb_001257_040 Hb_001257_040 Hb_029622_080--Hb_001257_040 Hb_032260_100--Hb_000656_350 Hb_000529_050 Hb_000529_050 Hb_032260_100--Hb_000529_050 Hb_032260_100--Hb_000571_030 Hb_007894_020 Hb_007894_020 Hb_101058_020--Hb_007894_020 Hb_101058_020--Hb_022137_020 Hb_101058_020--Hb_000665_090 Hb_101058_020--Hb_004079_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166128 39.0075 18.3277 17.2009 0.103148 0.023454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.915152 1.34335 0.0873653 0.523007 3.10427

CAGE analysis