Hb_001894_080

Information

Type -
Description -
Location Contig1894: 92940-96196
Sequence    

Annotation

kegg
ID rcu:RCOM_0528100
description ATP binding protein, putative (EC:2.7.11.30)
nr
ID XP_002525373.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SX31
description Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1
trembl
ID B9SHA4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0528100 PE=3 SV=1
Gene Ontology
ID GO:0004674
description proline-rich receptor-like protein kinase perk13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_080 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000236_170 0.2408519927 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
3 Hb_001341_140 0.2423366102 - - -
4 Hb_004947_010 0.2643732564 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
5 Hb_033153_080 0.2755311721 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
6 Hb_016875_010 0.2797276232 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_094529_020 0.2967386125 - - leucine-rich repeat containing protein, putative [Ricinus communis]
8 Hb_000160_050 0.2981098043 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
9 Hb_003996_030 0.3047533487 - - -
10 Hb_008054_060 0.3075599929 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
11 Hb_000676_280 0.3254598495 - - ATP binding protein, putative [Ricinus communis]
12 Hb_002367_030 0.3298692483 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
13 Hb_017400_010 0.3331203942 - - unnamed protein product [Vitis vinifera]
14 Hb_000164_210 0.3392677899 - - glutaredoxin-1, grx1, putative [Ricinus communis]
15 Hb_019818_010 0.339542456 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
16 Hb_001633_190 0.3402781321 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
17 Hb_001195_240 0.3452432064 transcription factor TF Family: MYB-related PREDICTED: protein RADIALIS-like 3 [Jatropha curcas]
18 Hb_001248_120 0.3468253917 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000042_350 0.3485591816 - - hypothetical protein JCGZ_00710 [Jatropha curcas]
20 Hb_003540_180 0.3488470531 - - -

Gene co-expression network

sample Hb_001894_080 Hb_001894_080 Hb_000236_170 Hb_000236_170 Hb_001894_080--Hb_000236_170 Hb_001341_140 Hb_001341_140 Hb_001894_080--Hb_001341_140 Hb_004947_010 Hb_004947_010 Hb_001894_080--Hb_004947_010 Hb_033153_080 Hb_033153_080 Hb_001894_080--Hb_033153_080 Hb_016875_010 Hb_016875_010 Hb_001894_080--Hb_016875_010 Hb_094529_020 Hb_094529_020 Hb_001894_080--Hb_094529_020 Hb_000042_350 Hb_000042_350 Hb_000236_170--Hb_000042_350 Hb_003988_020 Hb_003988_020 Hb_000236_170--Hb_003988_020 Hb_002003_100 Hb_002003_100 Hb_000236_170--Hb_002003_100 Hb_000236_170--Hb_001341_140 Hb_006663_110 Hb_006663_110 Hb_000236_170--Hb_006663_110 Hb_036693_020 Hb_036693_020 Hb_001341_140--Hb_036693_020 Hb_003050_240 Hb_003050_240 Hb_001341_140--Hb_003050_240 Hb_000579_160 Hb_000579_160 Hb_001341_140--Hb_000579_160 Hb_003902_080 Hb_003902_080 Hb_001341_140--Hb_003902_080 Hb_004947_010--Hb_016875_010 Hb_008054_060 Hb_008054_060 Hb_004947_010--Hb_008054_060 Hb_004947_010--Hb_033153_080 Hb_004947_010--Hb_094529_020 Hb_112440_010 Hb_112440_010 Hb_004947_010--Hb_112440_010 Hb_000160_050 Hb_000160_050 Hb_004947_010--Hb_000160_050 Hb_033153_080--Hb_000160_050 Hb_033153_080--Hb_094529_020 Hb_033153_080--Hb_016875_010 Hb_003540_180 Hb_003540_180 Hb_033153_080--Hb_003540_180 Hb_002367_030 Hb_002367_030 Hb_033153_080--Hb_002367_030 Hb_016875_010--Hb_000160_050 Hb_003095_080 Hb_003095_080 Hb_016875_010--Hb_003095_080 Hb_016875_010--Hb_008054_060 Hb_016875_010--Hb_094529_020 Hb_001248_120 Hb_001248_120 Hb_094529_020--Hb_001248_120 Hb_094529_020--Hb_000160_050 Hb_003411_120 Hb_003411_120 Hb_094529_020--Hb_003411_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0110404 0 0 0.0533172 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0159213 0 0.00632855 0

CAGE analysis