Hb_001894_090

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1894: 97570-100602
Sequence    

Annotation

kegg
ID rcu:RCOM_0528090
description hypothetical protein
nr
ID XP_012085390.1
description PREDICTED: transcription factor bHLH90 [Jatropha curcas]
swissprot
ID Q0WNR2
description Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2 SV=1
trembl
ID A0A067JRR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17750 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh90

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_090 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH90 [Jatropha curcas]
2 Hb_000343_180 0.2140797069 - - NDWp3 [Podospora anserina]
3 Hb_000802_110 0.2276495528 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
4 Hb_000260_290 0.2392845008 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
5 Hb_002686_120 0.264520276 - - short-chain type dehydrogenase, putative [Ricinus communis]
6 Hb_001863_440 0.2651939274 - - Nodulin-26, putative [Ricinus communis]
7 Hb_001433_180 0.2696699189 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
8 Hb_000454_060 0.2747461126 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
9 Hb_015690_020 0.2757038109 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
10 Hb_008173_030 0.277893644 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
11 Hb_010288_040 0.282085573 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
12 Hb_031862_040 0.2840009605 - - purine transporter, putative [Ricinus communis]
13 Hb_000345_200 0.2857389534 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
14 Hb_000272_120 0.2863306524 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
15 Hb_000796_250 0.2901993839 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
16 Hb_001621_070 0.2935969839 - - hypothetical protein POPTR_0008s05890g [Populus trichocarpa]
17 Hb_006502_050 0.2960507367 - - -
18 Hb_115241_010 0.2966062591 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
19 Hb_000975_360 0.2970190134 - - conserved hypothetical protein [Ricinus communis]
20 Hb_021888_050 0.2973321233 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]

Gene co-expression network

sample Hb_001894_090 Hb_001894_090 Hb_000343_180 Hb_000343_180 Hb_001894_090--Hb_000343_180 Hb_000802_110 Hb_000802_110 Hb_001894_090--Hb_000802_110 Hb_000260_290 Hb_000260_290 Hb_001894_090--Hb_000260_290 Hb_002686_120 Hb_002686_120 Hb_001894_090--Hb_002686_120 Hb_001863_440 Hb_001863_440 Hb_001894_090--Hb_001863_440 Hb_001433_180 Hb_001433_180 Hb_001894_090--Hb_001433_180 Hb_000343_180--Hb_000802_110 Hb_002110_240 Hb_002110_240 Hb_000343_180--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_000343_180--Hb_008173_030 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020 Hb_168707_040 Hb_168707_040 Hb_000802_110--Hb_168707_040 Hb_000672_150 Hb_000672_150 Hb_000802_110--Hb_000672_150 Hb_014613_010 Hb_014613_010 Hb_000802_110--Hb_014613_010 Hb_000802_110--Hb_002686_120 Hb_000796_250 Hb_000796_250 Hb_000260_290--Hb_000796_250 Hb_015690_020 Hb_015690_020 Hb_000260_290--Hb_015690_020 Hb_000260_290--Hb_001433_180 Hb_001565_110 Hb_001565_110 Hb_000260_290--Hb_001565_110 Hb_003052_220 Hb_003052_220 Hb_000260_290--Hb_003052_220 Hb_031862_040 Hb_031862_040 Hb_000260_290--Hb_031862_040 Hb_002035_110 Hb_002035_110 Hb_002686_120--Hb_002035_110 Hb_000111_480 Hb_000111_480 Hb_002686_120--Hb_000111_480 Hb_006573_300 Hb_006573_300 Hb_002686_120--Hb_006573_300 Hb_004631_210 Hb_004631_210 Hb_002686_120--Hb_004631_210 Hb_006453_010 Hb_006453_010 Hb_002686_120--Hb_006453_010 Hb_002686_120--Hb_000343_180 Hb_089160_010 Hb_089160_010 Hb_001863_440--Hb_089160_010 Hb_008864_070 Hb_008864_070 Hb_001863_440--Hb_008864_070 Hb_001449_050 Hb_001449_050 Hb_001863_440--Hb_001449_050 Hb_006502_050 Hb_006502_050 Hb_001863_440--Hb_006502_050 Hb_161785_010 Hb_161785_010 Hb_001863_440--Hb_161785_010 Hb_007382_050 Hb_007382_050 Hb_001433_180--Hb_007382_050 Hb_001433_180--Hb_031862_040 Hb_003623_070 Hb_003623_070 Hb_001433_180--Hb_003623_070 Hb_000140_410 Hb_000140_410 Hb_001433_180--Hb_000140_410 Hb_001433_180--Hb_000796_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0254959 0.895049 0.147386 0.0100508 0 0.0631939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.580474 0.319683 0.258015 0.428026 0.0478939

CAGE analysis