Hb_001894_180

Information

Type -
Description -
Location Contig1894: 164480-166255
Sequence    

Annotation

kegg
ID rcu:RCOM_0528010
description hypothetical protein
nr
ID AIE11288.1
description galactinol synthase [Manihot esculenta]
swissprot
ID Q9XGN4
description Galactinol synthase 1 OS=Ajuga reptans GN=GOLS1 PE=1 SV=1
trembl
ID A0A068J1P9
description Hexosyltransferase OS=Manihot esculenta GN=GolS3 PE=2 SV=1
Gene Ontology
ID GO:0047216
description galactinol synthase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_180 0.0 - - galactinol synthase [Manihot esculenta]
2 Hb_168319_020 0.1956702191 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000398_050 0.2210961577 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
4 Hb_000028_500 0.227795773 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
5 Hb_126711_010 0.2316584592 - - JAZ10 [Hevea brasiliensis]
6 Hb_010377_020 0.2316971404 - - -
7 Hb_001329_030 0.2329425521 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002026_160 0.239987552 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
9 Hb_001268_320 0.2483226178 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
10 Hb_002092_030 0.2512129652 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
11 Hb_009010_040 0.2533333007 - - Peptide transporter, putative [Ricinus communis]
12 Hb_000110_390 0.2602902597 - - PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
13 Hb_000975_200 0.2615744749 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
14 Hb_000103_190 0.263450828 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
15 Hb_153774_010 0.2657099388 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001322_010 0.2712728786 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
17 Hb_003504_010 0.2725120406 - - hypothetical protein POPTR_0013s04290g [Populus trichocarpa]
18 Hb_156850_040 0.2729891364 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
19 Hb_002894_070 0.2738776885 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
20 Hb_005736_010 0.2754967596 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001894_180 Hb_001894_180 Hb_168319_020 Hb_168319_020 Hb_001894_180--Hb_168319_020 Hb_000398_050 Hb_000398_050 Hb_001894_180--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_001894_180--Hb_000028_500 Hb_126711_010 Hb_126711_010 Hb_001894_180--Hb_126711_010 Hb_010377_020 Hb_010377_020 Hb_001894_180--Hb_010377_020 Hb_001329_030 Hb_001329_030 Hb_001894_180--Hb_001329_030 Hb_000110_390 Hb_000110_390 Hb_168319_020--Hb_000110_390 Hb_009010_040 Hb_009010_040 Hb_168319_020--Hb_009010_040 Hb_003360_050 Hb_003360_050 Hb_168319_020--Hb_003360_050 Hb_153774_010 Hb_153774_010 Hb_168319_020--Hb_153774_010 Hb_050229_030 Hb_050229_030 Hb_168319_020--Hb_050229_030 Hb_000398_050--Hb_000028_500 Hb_000191_010 Hb_000191_010 Hb_000398_050--Hb_000191_010 Hb_026198_030 Hb_026198_030 Hb_000398_050--Hb_026198_030 Hb_000554_030 Hb_000554_030 Hb_000398_050--Hb_000554_030 Hb_023344_070 Hb_023344_070 Hb_000398_050--Hb_023344_070 Hb_000028_500--Hb_026198_030 Hb_003159_150 Hb_003159_150 Hb_000028_500--Hb_003159_150 Hb_002893_030 Hb_002893_030 Hb_000028_500--Hb_002893_030 Hb_002000_090 Hb_002000_090 Hb_000028_500--Hb_002000_090 Hb_005539_260 Hb_005539_260 Hb_000028_500--Hb_005539_260 Hb_123301_010 Hb_123301_010 Hb_126711_010--Hb_123301_010 Hb_126711_010--Hb_001329_030 Hb_001369_500 Hb_001369_500 Hb_126711_010--Hb_001369_500 Hb_000062_200 Hb_000062_200 Hb_126711_010--Hb_000062_200 Hb_000313_280 Hb_000313_280 Hb_126711_010--Hb_000313_280 Hb_000649_340 Hb_000649_340 Hb_126711_010--Hb_000649_340 Hb_001268_320 Hb_001268_320 Hb_010377_020--Hb_001268_320 Hb_002092_030 Hb_002092_030 Hb_010377_020--Hb_002092_030 Hb_010377_020--Hb_000110_390 Hb_001242_010 Hb_001242_010 Hb_010377_020--Hb_001242_010 Hb_010377_020--Hb_001329_030 Hb_001329_030--Hb_009010_040 Hb_001329_030--Hb_168319_020 Hb_001638_180 Hb_001638_180 Hb_001329_030--Hb_001638_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.918791 0.194442 4.27951 0.069381 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0321375 0.956264 0.463513 0.0664885

CAGE analysis