Hb_001897_040

Information

Type -
Description -
Location Contig1897: 66452-76774
Sequence    

Annotation

kegg
ID rcu:RCOM_1131910
description 26S proteasome non-atpase regulatory subunit, putative
nr
ID XP_002533858.1
description 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
swissprot
ID P55034
description 26S proteasome non-ATPase regulatory subunit 4 homolog OS=Arabidopsis thaliana GN=RPN10 PE=1 SV=1
trembl
ID B9T6I9
description 26S proteasome non-atpase regulatory subunit, putative OS=Ricinus communis GN=RCOM_1131910 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18824: 66696-76759 , PASA_asmbl_18825: 66696-76759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001897_040 0.0 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
2 Hb_004126_070 0.0837496598 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
3 Hb_001811_030 0.1022322761 - - Beta-ureidopropionase, putative [Ricinus communis]
4 Hb_000922_390 0.1100449539 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
5 Hb_001014_040 0.1121216399 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
6 Hb_003470_090 0.1121968461 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
7 Hb_000291_080 0.1147803169 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
8 Hb_002687_110 0.1156708493 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
9 Hb_004738_040 0.1160421033 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
10 Hb_000130_050 0.1186008889 - - 14-3-3 protein, putative [Ricinus communis]
11 Hb_003032_010 0.1190168872 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
12 Hb_000359_010 0.1192574976 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
13 Hb_000482_090 0.1193240592 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
14 Hb_032264_110 0.1203695824 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
15 Hb_002005_020 0.1203817394 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004079_030 0.1263656103 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
17 Hb_000431_010 0.1265840723 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
18 Hb_003943_040 0.130423146 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000096_010 0.1310342444 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
20 Hb_008616_070 0.1310624702 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001897_040 Hb_001897_040 Hb_004126_070 Hb_004126_070 Hb_001897_040--Hb_004126_070 Hb_001811_030 Hb_001811_030 Hb_001897_040--Hb_001811_030 Hb_000922_390 Hb_000922_390 Hb_001897_040--Hb_000922_390 Hb_001014_040 Hb_001014_040 Hb_001897_040--Hb_001014_040 Hb_003470_090 Hb_003470_090 Hb_001897_040--Hb_003470_090 Hb_000291_080 Hb_000291_080 Hb_001897_040--Hb_000291_080 Hb_000108_190 Hb_000108_190 Hb_004126_070--Hb_000108_190 Hb_000841_020 Hb_000841_020 Hb_004126_070--Hb_000841_020 Hb_004126_070--Hb_000291_080 Hb_032264_110 Hb_032264_110 Hb_004126_070--Hb_032264_110 Hb_001059_030 Hb_001059_030 Hb_004126_070--Hb_001059_030 Hb_001811_030--Hb_001014_040 Hb_004079_030 Hb_004079_030 Hb_001811_030--Hb_004079_030 Hb_001811_030--Hb_000922_390 Hb_001507_040 Hb_001507_040 Hb_001811_030--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_001811_030--Hb_000445_040 Hb_008616_070 Hb_008616_070 Hb_001811_030--Hb_008616_070 Hb_011671_450 Hb_011671_450 Hb_000922_390--Hb_011671_450 Hb_093458_050 Hb_093458_050 Hb_000922_390--Hb_093458_050 Hb_009193_030 Hb_009193_030 Hb_000922_390--Hb_009193_030 Hb_002600_040 Hb_002600_040 Hb_000922_390--Hb_002600_040 Hb_000820_090 Hb_000820_090 Hb_000922_390--Hb_000820_090 Hb_000108_070 Hb_000108_070 Hb_001014_040--Hb_000108_070 Hb_031862_110 Hb_031862_110 Hb_001014_040--Hb_031862_110 Hb_002005_020 Hb_002005_020 Hb_001014_040--Hb_002005_020 Hb_002374_100 Hb_002374_100 Hb_001014_040--Hb_002374_100 Hb_000130_050 Hb_000130_050 Hb_001014_040--Hb_000130_050 Hb_003177_030 Hb_003177_030 Hb_003470_090--Hb_003177_030 Hb_000749_220 Hb_000749_220 Hb_003470_090--Hb_000749_220 Hb_000096_010 Hb_000096_010 Hb_003470_090--Hb_000096_010 Hb_005490_030 Hb_005490_030 Hb_003470_090--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_003470_090--Hb_001159_130 Hb_007460_020 Hb_007460_020 Hb_003470_090--Hb_007460_020 Hb_001390_130 Hb_001390_130 Hb_000291_080--Hb_001390_130 Hb_002111_040 Hb_002111_040 Hb_000291_080--Hb_002111_040 Hb_000291_080--Hb_000820_090 Hb_003697_040 Hb_003697_040 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000363_360 Hb_000363_360 Hb_000291_080--Hb_000363_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0643 2.93089 7.19512 16.441 19.9767 10.9567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2789 18.3814 38.236 14.2013 8.46378

CAGE analysis