Hb_001898_040

Information

Type -
Description -
Location Contig1898: 46463-48256
Sequence    

Annotation

kegg
ID rcu:RCOM_0759460
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002526451.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID O65440
description Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3
trembl
ID B9SKD2
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0759460 PE=4 SV=1
Gene Ontology
ID GO:0005622
description leucine-rich repeat receptor-like serine threonine-protein kinase bam3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18828: 48198-48381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_040 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_001136_160 0.0411894809 - - catalytic, putative [Ricinus communis]
3 Hb_009783_010 0.0663515427 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
4 Hb_010962_020 0.0712212399 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
5 Hb_001136_040 0.0715669794 - - amino acid transporter, putative [Ricinus communis]
6 Hb_012132_050 0.0748580152 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
7 Hb_007185_050 0.0764995306 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
8 Hb_000003_280 0.0828903542 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002874_200 0.0837127984 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
10 Hb_007904_280 0.085137426 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
11 Hb_004032_290 0.0874572709 - - protein binding protein, putative [Ricinus communis]
12 Hb_007122_020 0.0898513784 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
13 Hb_000866_130 0.0914333819 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
14 Hb_002471_130 0.0948595844 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
15 Hb_000395_310 0.0954402809 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_002902_060 0.0983732282 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
17 Hb_000230_410 0.0986513859 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
18 Hb_000103_450 0.099084584 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
19 Hb_000009_280 0.0999987371 - - Calmodulin, putative [Ricinus communis]
20 Hb_053264_010 0.1013874126 - - beta glucosidase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001898_040 Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_001898_040--Hb_001136_160 Hb_009783_010 Hb_009783_010 Hb_001898_040--Hb_009783_010 Hb_010962_020 Hb_010962_020 Hb_001898_040--Hb_010962_020 Hb_001136_040 Hb_001136_040 Hb_001898_040--Hb_001136_040 Hb_012132_050 Hb_012132_050 Hb_001898_040--Hb_012132_050 Hb_007185_050 Hb_007185_050 Hb_001898_040--Hb_007185_050 Hb_001136_160--Hb_001136_040 Hb_001136_160--Hb_009783_010 Hb_007122_020 Hb_007122_020 Hb_001136_160--Hb_007122_020 Hb_001136_160--Hb_010962_020 Hb_001136_160--Hb_012132_050 Hb_007904_280 Hb_007904_280 Hb_009783_010--Hb_007904_280 Hb_009783_010--Hb_012132_050 Hb_009783_010--Hb_001136_040 Hb_009783_010--Hb_007185_050 Hb_001047_090 Hb_001047_090 Hb_010962_020--Hb_001047_090 Hb_002902_060 Hb_002902_060 Hb_010962_020--Hb_002902_060 Hb_006846_040 Hb_006846_040 Hb_010962_020--Hb_006846_040 Hb_000003_280 Hb_000003_280 Hb_010962_020--Hb_000003_280 Hb_001136_040--Hb_007185_050 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_000009_280 Hb_000009_280 Hb_001136_040--Hb_000009_280 Hb_012132_050--Hb_007904_280 Hb_001408_080 Hb_001408_080 Hb_012132_050--Hb_001408_080 Hb_003466_010 Hb_003466_010 Hb_012132_050--Hb_003466_010 Hb_007185_050--Hb_000009_280 Hb_004032_290 Hb_004032_290 Hb_007185_050--Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_007185_050--Hb_002874_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.324307 1.46776 3.94095 0 0.0392406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.103799 1.39334

CAGE analysis