Hb_001898_050

Information

Type -
Description -
Location Contig1898: 80439-84700
Sequence    

Annotation

kegg
ID egr:104420002
description 60S ribosomal protein L3
nr
ID XP_010030177.1
description PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
swissprot
ID P35684
description 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2
trembl
ID A0A059ATX9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02767 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18829: 82506-84667 , PASA_asmbl_18830: 80584-83220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_050 0.0 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
2 Hb_000210_060 0.1008440437 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
3 Hb_000330_090 0.102038952 - - ornithine carbamoyltransferase, putative [Ricinus communis]
4 Hb_000392_550 0.1061903809 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001408_060 0.1078241615 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
6 Hb_007199_020 0.1097666389 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
7 Hb_007904_230 0.1099174259 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
8 Hb_001221_030 0.110579052 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
9 Hb_000174_260 0.1110130149 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
10 Hb_015057_020 0.1118424483 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
11 Hb_000189_570 0.1141125788 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
12 Hb_005883_080 0.1171703651 - - type 2A protein phosphatase-2 [Populus trichocarpa]
13 Hb_001369_790 0.1190750869 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
14 Hb_002968_040 0.1210751615 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
15 Hb_005276_040 0.1227142069 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
16 Hb_004123_020 0.125203565 - - amino acid binding protein, putative [Ricinus communis]
17 Hb_000364_050 0.1255621927 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
18 Hb_000510_030 0.1275110543 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
19 Hb_004216_060 0.130147662 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000510_080 0.1307402959 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]

Gene co-expression network

sample Hb_001898_050 Hb_001898_050 Hb_000210_060 Hb_000210_060 Hb_001898_050--Hb_000210_060 Hb_000330_090 Hb_000330_090 Hb_001898_050--Hb_000330_090 Hb_000392_550 Hb_000392_550 Hb_001898_050--Hb_000392_550 Hb_001408_060 Hb_001408_060 Hb_001898_050--Hb_001408_060 Hb_007199_020 Hb_007199_020 Hb_001898_050--Hb_007199_020 Hb_007904_230 Hb_007904_230 Hb_001898_050--Hb_007904_230 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_168893_020 Hb_168893_020 Hb_000210_060--Hb_168893_020 Hb_002477_290 Hb_002477_290 Hb_000210_060--Hb_002477_290 Hb_001510_020 Hb_001510_020 Hb_000210_060--Hb_001510_020 Hb_005276_040 Hb_005276_040 Hb_000210_060--Hb_005276_040 Hb_049575_010 Hb_049575_010 Hb_000330_090--Hb_049575_010 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_000330_090--Hb_007904_230 Hb_000330_090--Hb_007199_020 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_001369_790 Hb_001369_790 Hb_000392_550--Hb_001369_790 Hb_000032_370 Hb_000032_370 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_001408_060--Hb_000392_550 Hb_020025_010 Hb_020025_010 Hb_001408_060--Hb_020025_010 Hb_001408_060--Hb_001369_790 Hb_000107_150 Hb_000107_150 Hb_001408_060--Hb_000107_150 Hb_008695_200 Hb_008695_200 Hb_001408_060--Hb_008695_200 Hb_001804_090 Hb_001804_090 Hb_007199_020--Hb_001804_090 Hb_001623_500 Hb_001623_500 Hb_007199_020--Hb_001623_500 Hb_005214_170 Hb_005214_170 Hb_007199_020--Hb_005214_170 Hb_007199_020--Hb_007904_230 Hb_007199_020--Hb_000174_260 Hb_000364_050 Hb_000364_050 Hb_007904_230--Hb_000364_050 Hb_003266_030 Hb_003266_030 Hb_007904_230--Hb_003266_030 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_007904_230--Hb_049575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8877 9.75069 45.9969 35.1289 9.7369 7.28944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.226 48.5066 18.996 38.4391 38.984

CAGE analysis