Hb_001898_060

Information

Type -
Description -
Location Contig1898: 85948-89952
Sequence    

Annotation

kegg
ID rcu:RCOM_0759140
description hypothetical protein
nr
ID XP_002526449.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0759140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18831: 86654-88044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010174_190 0.1326643353 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
3 Hb_001596_020 0.1434777443 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
4 Hb_002324_040 0.1542091468 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
5 Hb_012727_010 0.1556046492 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_000317_230 0.1580866519 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_000429_110 0.1592432846 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
8 Hb_001178_080 0.1592706168 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
9 Hb_003579_040 0.1606657377 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
10 Hb_009615_100 0.1617185473 - - hypothetical protein JCGZ_24459 [Jatropha curcas]
11 Hb_025432_010 0.1634524495 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
12 Hb_003025_150 0.1642785371 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000009_300 0.1643949697 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
14 Hb_001856_170 0.1660882449 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
15 Hb_002028_160 0.1675087766 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
16 Hb_055531_010 0.168252506 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
17 Hb_000002_360 0.1725458114 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
18 Hb_002928_120 0.1734116363 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
19 Hb_002662_090 0.1757004875 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
20 Hb_004531_110 0.1784475196 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001898_060 Hb_001898_060 Hb_010174_190 Hb_010174_190 Hb_001898_060--Hb_010174_190 Hb_001596_020 Hb_001596_020 Hb_001898_060--Hb_001596_020 Hb_002324_040 Hb_002324_040 Hb_001898_060--Hb_002324_040 Hb_012727_010 Hb_012727_010 Hb_001898_060--Hb_012727_010 Hb_000317_230 Hb_000317_230 Hb_001898_060--Hb_000317_230 Hb_000429_110 Hb_000429_110 Hb_001898_060--Hb_000429_110 Hb_025432_010 Hb_025432_010 Hb_010174_190--Hb_025432_010 Hb_064985_010 Hb_064985_010 Hb_010174_190--Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_010174_190--Hb_001008_110 Hb_022501_020 Hb_022501_020 Hb_010174_190--Hb_022501_020 Hb_002928_180 Hb_002928_180 Hb_010174_190--Hb_002928_180 Hb_068332_010 Hb_068332_010 Hb_010174_190--Hb_068332_010 Hb_006831_080 Hb_006831_080 Hb_001596_020--Hb_006831_080 Hb_001856_170 Hb_001856_170 Hb_001596_020--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_001596_020--Hb_000120_310 Hb_001369_160 Hb_001369_160 Hb_001596_020--Hb_001369_160 Hb_004586_240 Hb_004586_240 Hb_001596_020--Hb_004586_240 Hb_001178_080 Hb_001178_080 Hb_001596_020--Hb_001178_080 Hb_003025_150 Hb_003025_150 Hb_002324_040--Hb_003025_150 Hb_002324_040--Hb_012727_010 Hb_002324_050 Hb_002324_050 Hb_002324_040--Hb_002324_050 Hb_003579_040 Hb_003579_040 Hb_002324_040--Hb_003579_040 Hb_064047_010 Hb_064047_010 Hb_002324_040--Hb_064047_010 Hb_004032_250 Hb_004032_250 Hb_002324_040--Hb_004032_250 Hb_012727_010--Hb_003025_150 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_012727_010--Hb_003579_040 Hb_003788_010 Hb_003788_010 Hb_000317_230--Hb_003788_010 Hb_000317_220 Hb_000317_220 Hb_000317_230--Hb_000317_220 Hb_002028_160 Hb_002028_160 Hb_000317_230--Hb_002028_160 Hb_001856_160 Hb_001856_160 Hb_000317_230--Hb_001856_160 Hb_000022_280 Hb_000022_280 Hb_000317_230--Hb_000022_280 Hb_003376_300 Hb_003376_300 Hb_000317_230--Hb_003376_300 Hb_000429_110--Hb_002928_180 Hb_052764_080 Hb_052764_080 Hb_000429_110--Hb_052764_080 Hb_001259_100 Hb_001259_100 Hb_000429_110--Hb_001259_100 Hb_002928_120 Hb_002928_120 Hb_000429_110--Hb_002928_120 Hb_000429_110--Hb_010174_190 Hb_001355_070 Hb_001355_070 Hb_000429_110--Hb_001355_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.179106 15.5103 6.63011 17.3284 0.658804 2.14171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75237 0.612126 0.134303 15.1029 2.82438

CAGE analysis