Hb_001898_070

Information

Type -
Description -
Location Contig1898: 90564-94580
Sequence    

Annotation

kegg
ID pop:POPTR_0022s00580g
description pentatricopeptide repeat-containing family protein
nr
ID XP_012066783.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
swissprot
ID Q9LUS3
description Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
trembl
ID U7E1K1
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0022s00580g PE=4 SV=1
Gene Ontology
ID GO:0006302
description pentatricopeptide repeat-containing protein at3g16610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18832: 91979-92212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
2 Hb_002307_170 0.1073056568 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
3 Hb_004846_070 0.1082951309 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
4 Hb_000002_050 0.1104320638 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
5 Hb_002585_020 0.1116831333 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]
6 Hb_000340_390 0.1180186865 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
7 Hb_001454_190 0.1221942357 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
8 Hb_000603_110 0.1246283632 - - copper transporter, putative [Ricinus communis]
9 Hb_000283_080 0.1281689658 - - -
10 Hb_000367_060 0.128863397 - - diacylglycerol kinase, theta, putative [Ricinus communis]
11 Hb_004690_040 0.130070205 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
12 Hb_001373_180 0.130147625 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
13 Hb_000107_420 0.1309738441 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
14 Hb_129910_010 0.1313295609 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Populus euphratica]
15 Hb_003688_150 0.1314720124 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
16 Hb_172932_010 0.1343299196 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000206_240 0.1343453868 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000362_120 0.1345294905 - - glutamate receptor 2 plant, putative [Ricinus communis]
19 Hb_005188_020 0.1346184352 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
20 Hb_012325_020 0.1349318288 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001898_070 Hb_001898_070 Hb_002307_170 Hb_002307_170 Hb_001898_070--Hb_002307_170 Hb_004846_070 Hb_004846_070 Hb_001898_070--Hb_004846_070 Hb_000002_050 Hb_000002_050 Hb_001898_070--Hb_000002_050 Hb_002585_020 Hb_002585_020 Hb_001898_070--Hb_002585_020 Hb_000340_390 Hb_000340_390 Hb_001898_070--Hb_000340_390 Hb_001454_190 Hb_001454_190 Hb_001898_070--Hb_001454_190 Hb_013607_040 Hb_013607_040 Hb_002307_170--Hb_013607_040 Hb_002307_170--Hb_004846_070 Hb_011534_030 Hb_011534_030 Hb_002307_170--Hb_011534_030 Hb_000479_140 Hb_000479_140 Hb_002307_170--Hb_000479_140 Hb_001014_230 Hb_001014_230 Hb_002307_170--Hb_001014_230 Hb_000471_110 Hb_000471_110 Hb_002307_170--Hb_000471_110 Hb_000206_240 Hb_000206_240 Hb_004846_070--Hb_000206_240 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_004846_070--Hb_013607_040 Hb_004846_070--Hb_000002_050 Hb_008695_100 Hb_008695_100 Hb_004846_070--Hb_008695_100 Hb_000002_050--Hb_001454_190 Hb_007747_200 Hb_007747_200 Hb_000002_050--Hb_007747_200 Hb_016901_010 Hb_016901_010 Hb_000002_050--Hb_016901_010 Hb_000019_130 Hb_000019_130 Hb_000002_050--Hb_000019_130 Hb_001373_180 Hb_001373_180 Hb_000002_050--Hb_001373_180 Hb_000120_460 Hb_000120_460 Hb_002585_020--Hb_000120_460 Hb_002435_120 Hb_002435_120 Hb_002585_020--Hb_002435_120 Hb_002585_020--Hb_004846_070 Hb_000041_100 Hb_000041_100 Hb_002585_020--Hb_000041_100 Hb_006824_050 Hb_006824_050 Hb_002585_020--Hb_006824_050 Hb_002585_020--Hb_002307_170 Hb_000367_060 Hb_000367_060 Hb_000340_390--Hb_000367_060 Hb_000340_390--Hb_001454_190 Hb_003687_240 Hb_003687_240 Hb_000340_390--Hb_003687_240 Hb_001959_190 Hb_001959_190 Hb_000340_390--Hb_001959_190 Hb_004607_050 Hb_004607_050 Hb_000340_390--Hb_004607_050 Hb_001811_030 Hb_001811_030 Hb_000340_390--Hb_001811_030 Hb_172932_010 Hb_172932_010 Hb_001454_190--Hb_172932_010 Hb_012325_020 Hb_012325_020 Hb_001454_190--Hb_012325_020 Hb_001454_190--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_001454_190--Hb_000617_150 Hb_001454_190--Hb_011534_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.329861 0.766461 0.197801 0.296302 0.575163 0.762874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.479649 1.20781 1.89824 0.993585 0.93787

CAGE analysis