Hb_001898_080

Information

Type -
Description -
Location Contig1898: 95255-102343
Sequence    

Annotation

kegg
ID rcu:RCOM_0759120
description hypothetical protein
nr
ID XP_012066678.1
description PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
swissprot
ID Q9STW5
description MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1
trembl
ID A0A067L1Y7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00244 PE=4 SV=1
Gene Ontology
ID GO:0005886
description macpf domain-containing protein at4g24290-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18834: 94935-102129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_080 0.0 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
2 Hb_007416_090 0.0728491581 - - UDP-sugar transporter, putative [Ricinus communis]
3 Hb_001789_150 0.076512197 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
4 Hb_000406_140 0.0774980616 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003847_030 0.0810909248 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
6 Hb_000787_020 0.0833448802 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000505_150 0.0838343438 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
8 Hb_000574_450 0.0860912219 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
9 Hb_000140_380 0.0870383436 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
10 Hb_001352_020 0.0904638979 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
11 Hb_149985_010 0.0919425933 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
12 Hb_007044_050 0.0934435396 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
13 Hb_000012_310 0.0959368156 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
14 Hb_000212_450 0.0961370133 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
15 Hb_000049_210 0.096309125 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
16 Hb_007386_040 0.0967629272 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
17 Hb_164010_030 0.0974697395 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_000890_150 0.0984247849 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
19 Hb_000497_300 0.098721976 - - peroxisomal membrane protein [Hevea brasiliensis]
20 Hb_003376_250 0.0991934911 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001898_080 Hb_001898_080 Hb_007416_090 Hb_007416_090 Hb_001898_080--Hb_007416_090 Hb_001789_150 Hb_001789_150 Hb_001898_080--Hb_001789_150 Hb_000406_140 Hb_000406_140 Hb_001898_080--Hb_000406_140 Hb_003847_030 Hb_003847_030 Hb_001898_080--Hb_003847_030 Hb_000787_020 Hb_000787_020 Hb_001898_080--Hb_000787_020 Hb_000505_150 Hb_000505_150 Hb_001898_080--Hb_000505_150 Hb_000069_210 Hb_000069_210 Hb_007416_090--Hb_000069_210 Hb_000116_270 Hb_000116_270 Hb_007416_090--Hb_000116_270 Hb_007416_090--Hb_001789_150 Hb_149985_010 Hb_149985_010 Hb_007416_090--Hb_149985_010 Hb_000095_080 Hb_000095_080 Hb_007416_090--Hb_000095_080 Hb_000012_310 Hb_000012_310 Hb_001789_150--Hb_000012_310 Hb_000574_450 Hb_000574_450 Hb_001789_150--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_001789_150--Hb_010515_020 Hb_000497_300 Hb_000497_300 Hb_001789_150--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001789_150--Hb_001352_020 Hb_004480_100 Hb_004480_100 Hb_001789_150--Hb_004480_100 Hb_000406_140--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000406_140--Hb_164010_030 Hb_001163_100 Hb_001163_100 Hb_000406_140--Hb_001163_100 Hb_012490_080 Hb_012490_080 Hb_000406_140--Hb_012490_080 Hb_000009_560 Hb_000009_560 Hb_000406_140--Hb_000009_560 Hb_000327_180 Hb_000327_180 Hb_003847_030--Hb_000327_180 Hb_000049_210 Hb_000049_210 Hb_003847_030--Hb_000049_210 Hb_000614_250 Hb_000614_250 Hb_003847_030--Hb_000614_250 Hb_005054_110 Hb_005054_110 Hb_003847_030--Hb_005054_110 Hb_003847_030--Hb_000497_300 Hb_001014_030 Hb_001014_030 Hb_003847_030--Hb_001014_030 Hb_084646_010 Hb_084646_010 Hb_000787_020--Hb_084646_010 Hb_000890_150 Hb_000890_150 Hb_000787_020--Hb_000890_150 Hb_000483_260 Hb_000483_260 Hb_000787_020--Hb_000483_260 Hb_155159_020 Hb_155159_020 Hb_000787_020--Hb_155159_020 Hb_000787_020--Hb_000049_210 Hb_000140_380 Hb_000140_380 Hb_000787_020--Hb_000140_380 Hb_000252_100 Hb_000252_100 Hb_000505_150--Hb_000252_100 Hb_000505_150--Hb_000140_380 Hb_010344_050 Hb_010344_050 Hb_000505_150--Hb_010344_050 Hb_007386_040 Hb_007386_040 Hb_000505_150--Hb_007386_040 Hb_000853_200 Hb_000853_200 Hb_000505_150--Hb_000853_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63404 6.64638 3.67926 12.1185 4.55819 5.9277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88746 9.51645 12.0272 9.94129 7.42419

CAGE analysis