Hb_001898_090

Information

Type -
Description -
Location Contig1898: 104492-108643
Sequence    

Annotation

kegg
ID rcu:RCOM_0759010
description heat shock protein, putative (EC:1.3.1.74)
nr
ID XP_012066679.1
description PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
swissprot
ID Q02028
description Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1
trembl
ID A0A067L5D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00245 PE=3 SV=1
Gene Ontology
ID GO:0005524
description stromal 70 kda heat shock-related chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18835: 104615-108977
cDNA
(Sanger)
(ID:Location)		 029_M08.ab1: 104626-104956

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_090 0.0 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
2 Hb_000849_020 0.0885018893 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
3 Hb_000010_180 0.1054937586 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
4 Hb_000010_390 0.1060260713 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
5 Hb_000107_400 0.1102802828 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
6 Hb_012286_010 0.1126245044 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
7 Hb_002749_110 0.1138432593 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
8 Hb_000714_050 0.1170934397 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
9 Hb_000170_190 0.1174802984 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
10 Hb_000270_160 0.1181335632 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
11 Hb_004570_020 0.1187863308 - - PREDICTED: protein TIC 100 [Jatropha curcas]
12 Hb_003884_030 0.1188018591 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
13 Hb_010315_090 0.1216433276 - - suppressor of ty, putative [Ricinus communis]
14 Hb_005470_020 0.1222276401 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
15 Hb_000935_090 0.1223868704 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
16 Hb_006449_050 0.1241580731 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
17 Hb_023278_010 0.1243241798 - - Chaperone protein DnaJ [Glycine soja]
18 Hb_000139_230 0.1243855566 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
19 Hb_004218_240 0.1246893476 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
20 Hb_007904_120 0.1257122248 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001898_090 Hb_001898_090 Hb_000849_020 Hb_000849_020 Hb_001898_090--Hb_000849_020 Hb_000010_180 Hb_000010_180 Hb_001898_090--Hb_000010_180 Hb_000010_390 Hb_000010_390 Hb_001898_090--Hb_000010_390 Hb_000107_400 Hb_000107_400 Hb_001898_090--Hb_000107_400 Hb_012286_010 Hb_012286_010 Hb_001898_090--Hb_012286_010 Hb_002749_110 Hb_002749_110 Hb_001898_090--Hb_002749_110 Hb_000849_020--Hb_000107_400 Hb_010812_050 Hb_010812_050 Hb_000849_020--Hb_010812_050 Hb_003884_030 Hb_003884_030 Hb_000849_020--Hb_003884_030 Hb_000849_020--Hb_002749_110 Hb_001021_220 Hb_001021_220 Hb_000849_020--Hb_001021_220 Hb_003544_100 Hb_003544_100 Hb_000010_180--Hb_003544_100 Hb_015884_030 Hb_015884_030 Hb_000010_180--Hb_015884_030 Hb_006915_060 Hb_006915_060 Hb_000010_180--Hb_006915_060 Hb_006449_050 Hb_006449_050 Hb_000010_180--Hb_006449_050 Hb_000768_190 Hb_000768_190 Hb_000010_180--Hb_000768_190 Hb_002909_050 Hb_002909_050 Hb_000010_180--Hb_002909_050 Hb_002081_010 Hb_002081_010 Hb_000010_390--Hb_002081_010 Hb_117552_010 Hb_117552_010 Hb_000010_390--Hb_117552_010 Hb_000010_390--Hb_012286_010 Hb_000850_050 Hb_000850_050 Hb_000010_390--Hb_000850_050 Hb_003656_180 Hb_003656_180 Hb_000010_390--Hb_003656_180 Hb_000107_400--Hb_002749_110 Hb_008695_020 Hb_008695_020 Hb_000107_400--Hb_008695_020 Hb_116349_030 Hb_116349_030 Hb_000107_400--Hb_116349_030 Hb_000574_440 Hb_000574_440 Hb_000107_400--Hb_000574_440 Hb_003018_130 Hb_003018_130 Hb_000107_400--Hb_003018_130 Hb_002024_010 Hb_002024_010 Hb_012286_010--Hb_002024_010 Hb_002276_060 Hb_002276_060 Hb_012286_010--Hb_002276_060 Hb_004994_380 Hb_004994_380 Hb_012286_010--Hb_004994_380 Hb_002193_010 Hb_002193_010 Hb_012286_010--Hb_002193_010 Hb_008489_020 Hb_008489_020 Hb_012286_010--Hb_008489_020 Hb_000170_190 Hb_000170_190 Hb_012286_010--Hb_000170_190 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
490.477 226.521 198.254 141.421 458.485 456.05
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
216.51 63.8256 153.511 167.901 453.109

CAGE analysis