Hb_001898_100

Information

Type -
Description -
Location Contig1898: 110020-123314
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06020g
description POPTRDRAFT_645867; hypothetical protein
nr
ID XP_012066681.1
description PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
swissprot
ID F4KAK5
description Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=2 SV=1
trembl
ID A0A067LD73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00247 PE=4 SV=1
Gene Ontology
ID GO:0004609
description phosphatidylserine decarboxylase proenzyme 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_100 0.0 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
2 Hb_000212_270 0.0955693175 - - calreticulin, putative [Ricinus communis]
3 Hb_001544_060 0.1005763045 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
4 Hb_003337_020 0.1070845252 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
5 Hb_006789_030 0.10956785 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
6 Hb_000175_200 0.111117482 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001266_130 0.1228413724 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
8 Hb_001638_190 0.1236416885 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
9 Hb_003020_070 0.1239221429 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
10 Hb_031685_010 0.1244721983 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_007576_130 0.129665729 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
12 Hb_000252_240 0.132050717 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
13 Hb_007850_100 0.1374408581 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
14 Hb_007120_130 0.1382070567 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002030_090 0.1383354458 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
16 Hb_003453_060 0.1409966185 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
17 Hb_008878_020 0.1411344999 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
18 Hb_001172_150 0.1418468138 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
19 Hb_000260_240 0.1434520903 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
20 Hb_000265_170 0.1455366162 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001898_100 Hb_001898_100 Hb_000212_270 Hb_000212_270 Hb_001898_100--Hb_000212_270 Hb_001544_060 Hb_001544_060 Hb_001898_100--Hb_001544_060 Hb_003337_020 Hb_003337_020 Hb_001898_100--Hb_003337_020 Hb_006789_030 Hb_006789_030 Hb_001898_100--Hb_006789_030 Hb_000175_200 Hb_000175_200 Hb_001898_100--Hb_000175_200 Hb_001266_130 Hb_001266_130 Hb_001898_100--Hb_001266_130 Hb_008878_020 Hb_008878_020 Hb_000212_270--Hb_008878_020 Hb_000212_270--Hb_000175_200 Hb_000697_020 Hb_000697_020 Hb_000212_270--Hb_000697_020 Hb_001172_150 Hb_001172_150 Hb_000212_270--Hb_001172_150 Hb_003119_130 Hb_003119_130 Hb_000212_270--Hb_003119_130 Hb_000252_240 Hb_000252_240 Hb_001544_060--Hb_000252_240 Hb_000445_310 Hb_000445_310 Hb_001544_060--Hb_000445_310 Hb_003453_060 Hb_003453_060 Hb_001544_060--Hb_003453_060 Hb_001544_060--Hb_003337_020 Hb_001638_190 Hb_001638_190 Hb_001544_060--Hb_001638_190 Hb_000265_170 Hb_000265_170 Hb_003337_020--Hb_000265_170 Hb_063405_010 Hb_063405_010 Hb_003337_020--Hb_063405_010 Hb_003337_020--Hb_000697_020 Hb_005888_050 Hb_005888_050 Hb_003337_020--Hb_005888_050 Hb_031685_010 Hb_031685_010 Hb_006789_030--Hb_031685_010 Hb_010407_150 Hb_010407_150 Hb_006789_030--Hb_010407_150 Hb_029095_010 Hb_029095_010 Hb_006789_030--Hb_029095_010 Hb_006789_030--Hb_001544_060 Hb_034585_070 Hb_034585_070 Hb_006789_030--Hb_034585_070 Hb_000175_200--Hb_003119_130 Hb_000345_400 Hb_000345_400 Hb_000175_200--Hb_000345_400 Hb_000175_200--Hb_001638_190 Hb_004102_080 Hb_004102_080 Hb_000175_200--Hb_004102_080 Hb_000020_020 Hb_000020_020 Hb_001266_130--Hb_000020_020 Hb_001266_130--Hb_008878_020 Hb_001266_130--Hb_000212_270 Hb_000062_050 Hb_000062_050 Hb_001266_130--Hb_000062_050 Hb_001501_020 Hb_001501_020 Hb_001266_130--Hb_001501_020 Hb_000046_430 Hb_000046_430 Hb_001266_130--Hb_000046_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0297606 2.60875 10.0102 1.34131 0.00749698 0.0361068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0727263 0.057227 0.0817766 1.69334 4.98432

CAGE analysis