Hb_001898_140

Information

Type -
Description -
Location Contig1898: 136758-136976
Sequence    

Annotation

kegg
ID atr:s00071p00184460
description AMTR_s00071p00184460; hypothetical protein
nr
ID ERN20044.1
description hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID U5DC22
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00071p00184460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18836: 134794-137473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_140 0.0 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
2 Hb_000975_200 0.1367935356 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
3 Hb_002097_140 0.1467731055 - - CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]
4 Hb_031089_020 0.1524240868 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_080477_080 0.1627544609 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
6 Hb_005784_060 0.1672285402 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
7 Hb_122940_010 0.1685550476 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
8 Hb_003470_110 0.1728836266 - - unnamed protein product [Vitis vinifera]
9 Hb_001493_090 0.1742492809 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005813_010 0.1773127213 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_132840_160 0.1779009039 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000455_070 0.1840925646 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
13 Hb_004162_060 0.1871809362 - - unnamed protein product [Vitis vinifera]
14 Hb_003387_050 0.1885345508 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
15 Hb_158092_040 0.1894771358 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
16 Hb_001922_030 0.1915592362 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
17 Hb_061222_010 0.1943866732 - - hypothetical protein RCOM_0012650 [Ricinus communis]
18 Hb_000696_070 0.1947043143 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
19 Hb_001148_100 0.1973706696 - - -
20 Hb_011360_110 0.1983852294 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]

Gene co-expression network

sample Hb_001898_140 Hb_001898_140 Hb_000975_200 Hb_000975_200 Hb_001898_140--Hb_000975_200 Hb_002097_140 Hb_002097_140 Hb_001898_140--Hb_002097_140 Hb_031089_020 Hb_031089_020 Hb_001898_140--Hb_031089_020 Hb_080477_080 Hb_080477_080 Hb_001898_140--Hb_080477_080 Hb_005784_060 Hb_005784_060 Hb_001898_140--Hb_005784_060 Hb_122940_010 Hb_122940_010 Hb_001898_140--Hb_122940_010 Hb_000975_200--Hb_005784_060 Hb_061222_010 Hb_061222_010 Hb_000975_200--Hb_061222_010 Hb_000003_110 Hb_000003_110 Hb_000975_200--Hb_000003_110 Hb_000069_150 Hb_000069_150 Hb_000975_200--Hb_000069_150 Hb_010883_180 Hb_010883_180 Hb_000975_200--Hb_010883_180 Hb_005813_010 Hb_005813_010 Hb_002097_140--Hb_005813_010 Hb_001922_030 Hb_001922_030 Hb_002097_140--Hb_001922_030 Hb_000811_080 Hb_000811_080 Hb_002097_140--Hb_000811_080 Hb_002097_140--Hb_031089_020 Hb_002097_140--Hb_080477_080 Hb_003470_110 Hb_003470_110 Hb_031089_020--Hb_003470_110 Hb_084147_010 Hb_084147_010 Hb_031089_020--Hb_084147_010 Hb_031089_020--Hb_001922_030 Hb_004241_110 Hb_004241_110 Hb_031089_020--Hb_004241_110 Hb_002200_070 Hb_002200_070 Hb_031089_020--Hb_002200_070 Hb_030565_100 Hb_030565_100 Hb_031089_020--Hb_030565_100 Hb_003710_020 Hb_003710_020 Hb_080477_080--Hb_003710_020 Hb_158092_040 Hb_158092_040 Hb_080477_080--Hb_158092_040 Hb_004522_030 Hb_004522_030 Hb_080477_080--Hb_004522_030 Hb_143766_080 Hb_143766_080 Hb_080477_080--Hb_143766_080 Hb_001054_090 Hb_001054_090 Hb_080477_080--Hb_001054_090 Hb_000062_530 Hb_000062_530 Hb_080477_080--Hb_000062_530 Hb_007138_030 Hb_007138_030 Hb_005784_060--Hb_007138_030 Hb_005784_060--Hb_000003_110 Hb_000997_240 Hb_000997_240 Hb_005784_060--Hb_000997_240 Hb_179960_010 Hb_179960_010 Hb_005784_060--Hb_179960_010 Hb_005000_280 Hb_005000_280 Hb_005784_060--Hb_005000_280 Hb_122940_010--Hb_005813_010 Hb_122940_010--Hb_031089_020 Hb_122940_010--Hb_000975_200 Hb_003387_050 Hb_003387_050 Hb_122940_010--Hb_003387_050 Hb_122940_010--Hb_002097_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.498459 14.833 10.2782 70.3898 0.530373 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.97939 3.99634 9.22402 18.0152 14.5356

CAGE analysis