Hb_001898_160

Information

Type -
Description -
Location Contig1898: 143701-147524
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23390g
description hypothetical protein
nr
ID XP_006385046.1
description hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
swissprot
ID P52420
description Phosphoribosylamine--glycine ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR2 PE=2 SV=2
trembl
ID B9N0E9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23390g PE=3 SV=1
Gene Ontology
ID GO:0009570
description phosphoribosylamine--glycine ligase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18838: 143812-144006 , PASA_asmbl_18839: 144141-147619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_160 0.0 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
2 Hb_000047_030 0.089368849 - - tfiif-alpha, putative [Ricinus communis]
3 Hb_082609_010 0.0922099683 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
4 Hb_000236_070 0.0935992269 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000143_030 0.0937616105 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
6 Hb_011909_100 0.0958583888 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015198_020 0.0973312778 - - conserved hypothetical protein [Ricinus communis]
8 Hb_027654_060 0.1063054586 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
9 Hb_005183_120 0.1072701724 - - protein translocase, putative [Ricinus communis]
10 Hb_000206_210 0.1073812845 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
11 Hb_002799_110 0.1090234267 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
12 Hb_024185_020 0.109853686 - - -
13 Hb_000574_390 0.1119941422 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
14 Hb_011316_040 0.1127801033 - - peptidase, putative [Ricinus communis]
15 Hb_000928_210 0.1131330753 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
16 Hb_007632_220 0.1153408306 - - RNA-binding protein, putative [Ricinus communis]
17 Hb_009838_080 0.1163010047 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
18 Hb_001140_220 0.116489231 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_034013_020 0.1168581462 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
20 Hb_007904_260 0.1174828739 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]

Gene co-expression network

sample Hb_001898_160 Hb_001898_160 Hb_000047_030 Hb_000047_030 Hb_001898_160--Hb_000047_030 Hb_082609_010 Hb_082609_010 Hb_001898_160--Hb_082609_010 Hb_000236_070 Hb_000236_070 Hb_001898_160--Hb_000236_070 Hb_000143_030 Hb_000143_030 Hb_001898_160--Hb_000143_030 Hb_011909_100 Hb_011909_100 Hb_001898_160--Hb_011909_100 Hb_015198_020 Hb_015198_020 Hb_001898_160--Hb_015198_020 Hb_000047_030--Hb_015198_020 Hb_000574_390 Hb_000574_390 Hb_000047_030--Hb_000574_390 Hb_000928_210 Hb_000928_210 Hb_000047_030--Hb_000928_210 Hb_013405_030 Hb_013405_030 Hb_000047_030--Hb_013405_030 Hb_004724_080 Hb_004724_080 Hb_000047_030--Hb_004724_080 Hb_001140_220 Hb_001140_220 Hb_000047_030--Hb_001140_220 Hb_027654_060 Hb_027654_060 Hb_082609_010--Hb_027654_060 Hb_000352_270 Hb_000352_270 Hb_082609_010--Hb_000352_270 Hb_000614_220 Hb_000614_220 Hb_082609_010--Hb_000614_220 Hb_003020_220 Hb_003020_220 Hb_082609_010--Hb_003020_220 Hb_103118_010 Hb_103118_010 Hb_082609_010--Hb_103118_010 Hb_002205_070 Hb_002205_070 Hb_000236_070--Hb_002205_070 Hb_011316_040 Hb_011316_040 Hb_000236_070--Hb_011316_040 Hb_024185_020 Hb_024185_020 Hb_000236_070--Hb_024185_020 Hb_000107_620 Hb_000107_620 Hb_000236_070--Hb_000107_620 Hb_000648_110 Hb_000648_110 Hb_000236_070--Hb_000648_110 Hb_009838_080 Hb_009838_080 Hb_000236_070--Hb_009838_080 Hb_005183_120 Hb_005183_120 Hb_000143_030--Hb_005183_120 Hb_009113_070 Hb_009113_070 Hb_000143_030--Hb_009113_070 Hb_000143_030--Hb_000047_030 Hb_000676_150 Hb_000676_150 Hb_000143_030--Hb_000676_150 Hb_004116_140 Hb_004116_140 Hb_000143_030--Hb_004116_140 Hb_012675_050 Hb_012675_050 Hb_011909_100--Hb_012675_050 Hb_001083_020 Hb_001083_020 Hb_011909_100--Hb_001083_020 Hb_001775_110 Hb_001775_110 Hb_011909_100--Hb_001775_110 Hb_008554_070 Hb_008554_070 Hb_011909_100--Hb_008554_070 Hb_011909_100--Hb_103118_010 Hb_000962_040 Hb_000962_040 Hb_011909_100--Hb_000962_040 Hb_015198_020--Hb_000574_390 Hb_011242_040 Hb_011242_040 Hb_015198_020--Hb_011242_040 Hb_015198_020--Hb_013405_030 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3526 6.02005 9.47158 6.27813 13.1763 17.1271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7821 24.5644 35.4149 12.6118 23.9813

CAGE analysis