Hb_001898_220

Information

Type -
Description -
Location Contig1898: 201399-210870
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23450g
description Smg-4/UPF3 family protein
nr
ID XP_012066695.1
description PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FVW4
description Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana GN=UPF3 PE=1 SV=1
trembl
ID A0A067LED6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00256 PE=4 SV=1
Gene Ontology
ID GO:0000166
description regulator of nonsense transcripts upf3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18845: 201583-211113 , PASA_asmbl_18846: 201561-211129 , PASA_asmbl_18847: 206174-206635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_220 0.0 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
2 Hb_001635_060 0.0610946611 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
3 Hb_000000_250 0.0749345505 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
4 Hb_093084_050 0.0786819001 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
5 Hb_189003_080 0.079428229 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
6 Hb_002026_180 0.0826978118 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
7 Hb_000041_050 0.0827793557 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
8 Hb_000656_110 0.08309861 - - nucleolysin tia-1, putative [Ricinus communis]
9 Hb_008695_210 0.0853147812 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
10 Hb_000953_020 0.0855750376 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
11 Hb_000571_120 0.0871004417 - - importin beta-1, putative [Ricinus communis]
12 Hb_004907_110 0.0873335475 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
13 Hb_007532_030 0.0890463923 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
14 Hb_000207_250 0.0902496455 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
15 Hb_040575_010 0.0906071876 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
16 Hb_000700_110 0.0911170162 - - Vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_002016_110 0.0920610705 - - transducin family protein [Populus trichocarpa]
18 Hb_000805_020 0.0935301517 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
19 Hb_003464_060 0.0936952454 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
20 Hb_000907_080 0.0958779074 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]

Gene co-expression network

sample Hb_001898_220 Hb_001898_220 Hb_001635_060 Hb_001635_060 Hb_001898_220--Hb_001635_060 Hb_000000_250 Hb_000000_250 Hb_001898_220--Hb_000000_250 Hb_093084_050 Hb_093084_050 Hb_001898_220--Hb_093084_050 Hb_189003_080 Hb_189003_080 Hb_001898_220--Hb_189003_080 Hb_002026_180 Hb_002026_180 Hb_001898_220--Hb_002026_180 Hb_000041_050 Hb_000041_050 Hb_001898_220--Hb_000041_050 Hb_011485_070 Hb_011485_070 Hb_001635_060--Hb_011485_070 Hb_000185_040 Hb_000185_040 Hb_001635_060--Hb_000185_040 Hb_000656_110 Hb_000656_110 Hb_001635_060--Hb_000656_110 Hb_004218_110 Hb_004218_110 Hb_001635_060--Hb_004218_110 Hb_007441_230 Hb_007441_230 Hb_001635_060--Hb_007441_230 Hb_154648_010 Hb_154648_010 Hb_000000_250--Hb_154648_010 Hb_000086_400 Hb_000086_400 Hb_000000_250--Hb_000086_400 Hb_006922_110 Hb_006922_110 Hb_000000_250--Hb_006922_110 Hb_000000_250--Hb_189003_080 Hb_003996_020 Hb_003996_020 Hb_000000_250--Hb_003996_020 Hb_093084_050--Hb_000656_110 Hb_001102_140 Hb_001102_140 Hb_093084_050--Hb_001102_140 Hb_003057_100 Hb_003057_100 Hb_093084_050--Hb_003057_100 Hb_093084_050--Hb_000041_050 Hb_000445_420 Hb_000445_420 Hb_093084_050--Hb_000445_420 Hb_000567_260 Hb_000567_260 Hb_189003_080--Hb_000567_260 Hb_008695_210 Hb_008695_210 Hb_189003_080--Hb_008695_210 Hb_002016_110 Hb_002016_110 Hb_189003_080--Hb_002016_110 Hb_001671_020 Hb_001671_020 Hb_189003_080--Hb_001671_020 Hb_189003_080--Hb_002026_180 Hb_001248_130 Hb_001248_130 Hb_189003_080--Hb_001248_130 Hb_000030_300 Hb_000030_300 Hb_002026_180--Hb_000030_300 Hb_002026_180--Hb_002016_110 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_000041_050--Hb_000656_110 Hb_000700_110 Hb_000700_110 Hb_000041_050--Hb_000700_110 Hb_007441_120 Hb_007441_120 Hb_000041_050--Hb_007441_120 Hb_001833_110 Hb_001833_110 Hb_000041_050--Hb_001833_110 Hb_002759_060 Hb_002759_060 Hb_000041_050--Hb_002759_060 Hb_002477_330 Hb_002477_330 Hb_000041_050--Hb_002477_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7669 27.6685 10.3436 19.7912 22.0494 48.019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.4337 33.557 55.937 21.9739 17.7719

CAGE analysis