Hb_001899_010

Information

Type -
Description -
Location Contig1899: 14504-25040
Sequence    

Annotation

kegg
ID rcu:RCOM_0169100
description ubiquitin-protein ligase, putative
nr
ID XP_012084776.1
description PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
swissprot
ID Q9LF41
description Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=2 SV=1
trembl
ID A0A067JTK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19901 PE=4 SV=1
Gene Ontology
ID GO:0000151
description probable ubiquitin conjugation factor e4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001899_010 0.0 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
2 Hb_003529_210 0.1298711666 - - -
3 Hb_005799_030 0.1299451455 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
4 Hb_001135_270 0.1351933589 - - -
5 Hb_179763_010 0.1463930108 - - -
6 Hb_003529_220 0.1568287666 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
7 Hb_066784_020 0.1576978222 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001584_230 0.1612398296 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
9 Hb_081636_010 0.1735029077 - - -
10 Hb_000123_390 0.1751365004 - - conserved hypothetical protein [Ricinus communis]
11 Hb_067345_050 0.1843410313 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
12 Hb_000944_010 0.2059915942 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
13 Hb_003400_030 0.2059930724 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
14 Hb_008473_010 0.2060983264 - - PREDICTED: laccase-14-like [Jatropha curcas]
15 Hb_002400_450 0.2061171213 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
16 Hb_091369_010 0.2061347725 - - -
17 Hb_000260_190 0.2062218227 - - -
18 Hb_002673_050 0.2062242296 - - -
19 Hb_034667_010 0.2064636692 - - -
20 Hb_008151_030 0.2070014329 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001899_010 Hb_001899_010 Hb_003529_210 Hb_003529_210 Hb_001899_010--Hb_003529_210 Hb_005799_030 Hb_005799_030 Hb_001899_010--Hb_005799_030 Hb_001135_270 Hb_001135_270 Hb_001899_010--Hb_001135_270 Hb_179763_010 Hb_179763_010 Hb_001899_010--Hb_179763_010 Hb_003529_220 Hb_003529_220 Hb_001899_010--Hb_003529_220 Hb_066784_020 Hb_066784_020 Hb_001899_010--Hb_066784_020 Hb_003529_210--Hb_066784_020 Hb_064951_010 Hb_064951_010 Hb_003529_210--Hb_064951_010 Hb_067345_050 Hb_067345_050 Hb_003529_210--Hb_067345_050 Hb_076583_010 Hb_076583_010 Hb_003529_210--Hb_076583_010 Hb_003529_210--Hb_179763_010 Hb_005799_030--Hb_001135_270 Hb_081636_010 Hb_081636_010 Hb_005799_030--Hb_081636_010 Hb_001584_230 Hb_001584_230 Hb_005799_030--Hb_001584_230 Hb_000123_390 Hb_000123_390 Hb_005799_030--Hb_000123_390 Hb_005799_030--Hb_179763_010 Hb_001135_270--Hb_081636_010 Hb_001135_270--Hb_001584_230 Hb_001135_270--Hb_067345_050 Hb_001135_270--Hb_000123_390 Hb_179763_010--Hb_001135_270 Hb_179763_010--Hb_001584_230 Hb_179763_010--Hb_003529_220 Hb_108404_010 Hb_108404_010 Hb_003529_220--Hb_108404_010 Hb_002673_050 Hb_002673_050 Hb_003529_220--Hb_002673_050 Hb_091369_010 Hb_091369_010 Hb_003529_220--Hb_091369_010 Hb_008473_010 Hb_008473_010 Hb_003529_220--Hb_008473_010 Hb_066784_020--Hb_067345_050 Hb_066784_020--Hb_064951_010 Hb_066784_020--Hb_076583_010 Hb_066784_020--Hb_001135_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.347145 0 0.075336 0.0135154 2.5276 2.33423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis