Hb_001899_040

Information

Type -
Description -
Location Contig1899: 87372-90620
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12570g
description POPTRDRAFT_577709; hypothetical protein
nr
ID XP_012084853.1
description PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
swissprot
ID Q9LNJ0
description Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2
trembl
ID B9IK38
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12570g PE=4 SV=2
Gene Ontology
ID GO:0005622
description cyclic nucleotide-gated ion channel 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18860: 89967-90243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001899_040 0.0 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
2 Hb_002571_050 0.1325006818 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
3 Hb_027337_050 0.1336677963 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_009898_060 0.14706374 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
5 Hb_000300_240 0.1481357342 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
6 Hb_038190_030 0.1528059037 - - -
7 Hb_000002_280 0.1616328618 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
8 Hb_005081_090 0.1663243032 - - -
9 Hb_002056_140 0.1774533712 - - -
10 Hb_004191_030 0.1822621419 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
11 Hb_000392_510 0.1846961515 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
12 Hb_003727_060 0.1847690347 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000243_310 0.18870084 - - lactoylglutathione lyase, putative [Ricinus communis]
14 Hb_008195_020 0.1900047893 - - Vacuolar-processing enzyme precursor [Ricinus communis]
15 Hb_000029_180 0.1904211775 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
16 Hb_002221_020 0.1917059871 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
17 Hb_000286_180 0.2004732755 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
18 Hb_000236_430 0.2007960042 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
19 Hb_002025_240 0.2051975405 - - -
20 Hb_000640_280 0.206081391 - - Stachyose synthase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001899_040 Hb_001899_040 Hb_002571_050 Hb_002571_050 Hb_001899_040--Hb_002571_050 Hb_027337_050 Hb_027337_050 Hb_001899_040--Hb_027337_050 Hb_009898_060 Hb_009898_060 Hb_001899_040--Hb_009898_060 Hb_000300_240 Hb_000300_240 Hb_001899_040--Hb_000300_240 Hb_038190_030 Hb_038190_030 Hb_001899_040--Hb_038190_030 Hb_000002_280 Hb_000002_280 Hb_001899_040--Hb_000002_280 Hb_002221_020 Hb_002221_020 Hb_002571_050--Hb_002221_020 Hb_002571_050--Hb_000002_280 Hb_005081_090 Hb_005081_090 Hb_002571_050--Hb_005081_090 Hb_000915_220 Hb_000915_220 Hb_002571_050--Hb_000915_220 Hb_002571_050--Hb_000300_240 Hb_130579_050 Hb_130579_050 Hb_027337_050--Hb_130579_050 Hb_172426_010 Hb_172426_010 Hb_027337_050--Hb_172426_010 Hb_002025_240 Hb_002025_240 Hb_027337_050--Hb_002025_240 Hb_001205_170 Hb_001205_170 Hb_027337_050--Hb_001205_170 Hb_003727_060 Hb_003727_060 Hb_027337_050--Hb_003727_060 Hb_056506_010 Hb_056506_010 Hb_009898_060--Hb_056506_010 Hb_000061_110 Hb_000061_110 Hb_009898_060--Hb_000061_110 Hb_003649_030 Hb_003649_030 Hb_009898_060--Hb_003649_030 Hb_002056_140 Hb_002056_140 Hb_009898_060--Hb_002056_140 Hb_000269_040 Hb_000269_040 Hb_009898_060--Hb_000269_040 Hb_000300_240--Hb_000002_280 Hb_166828_010 Hb_166828_010 Hb_000300_240--Hb_166828_010 Hb_002092_140 Hb_002092_140 Hb_000300_240--Hb_002092_140 Hb_000320_170 Hb_000320_170 Hb_000300_240--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_000300_240--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_000300_240--Hb_003582_050 Hb_003938_100 Hb_003938_100 Hb_038190_030--Hb_003938_100 Hb_038190_030--Hb_005081_090 Hb_038190_030--Hb_002056_140 Hb_007709_020 Hb_007709_020 Hb_038190_030--Hb_007709_020 Hb_038190_030--Hb_003727_060 Hb_138667_010 Hb_138667_010 Hb_038190_030--Hb_138667_010 Hb_000002_280--Hb_002092_140 Hb_000002_280--Hb_166828_010 Hb_080873_010 Hb_080873_010 Hb_000002_280--Hb_080873_010 Hb_010091_040 Hb_010091_040 Hb_000002_280--Hb_010091_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.41708 0.0286485 0.0623007 0.0187038 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.295197 1.35063

CAGE analysis