Hb_001900_060

Information

Type -
Description -
Location Contig1900: 107162-131005
Sequence    

Annotation

kegg
ID rcu:RCOM_0866510
description neutral alpha-glucosidase ab precursor, putative (EC:3.2.1.20)
nr
ID XP_012070491.1
description PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
swissprot
ID Q9F234
description Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens PE=3 SV=1
trembl
ID B9S1M1
description Neutral alpha-glucosidase ab, putative OS=Ricinus communis GN=RCOM_0866510 PE=3 SV=1
Gene Ontology
ID GO:0004553
description neutral alpha-glucosidase c-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18940: 107761-130870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001900_060 0.0 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
2 Hb_000702_060 0.1195892307 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000684_360 0.1307557254 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
4 Hb_169051_010 0.1327006547 - - JHL06B08.1 [Jatropha curcas]
5 Hb_000362_110 0.1360516959 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
6 Hb_000793_040 0.1365939418 - - PREDICTED: transcription factor LHW [Jatropha curcas]
7 Hb_000083_130 0.1392264696 - - hypothetical protein RCOM_0884570 [Ricinus communis]
8 Hb_000000_120 0.1411012034 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
9 Hb_005181_180 0.1497506396 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000220_080 0.1506133635 - - kinase, putative [Ricinus communis]
11 Hb_001369_160 0.1529521796 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
12 Hb_002928_120 0.1542295962 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
13 Hb_003607_060 0.1569963273 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
14 Hb_001780_150 0.1578707312 - - ceramidase, putative [Ricinus communis]
15 Hb_146510_010 0.1648652244 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
16 Hb_028115_010 0.1650300602 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003506_020 0.1660366621 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
18 Hb_069619_010 0.1683142129 - - Aspartic proteinase precursor, putative [Ricinus communis]
19 Hb_001832_210 0.1696214438 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
20 Hb_002213_090 0.1701359807 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]

Gene co-expression network

sample Hb_001900_060 Hb_001900_060 Hb_000702_060 Hb_000702_060 Hb_001900_060--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_001900_060--Hb_000684_360 Hb_169051_010 Hb_169051_010 Hb_001900_060--Hb_169051_010 Hb_000362_110 Hb_000362_110 Hb_001900_060--Hb_000362_110 Hb_000793_040 Hb_000793_040 Hb_001900_060--Hb_000793_040 Hb_000083_130 Hb_000083_130 Hb_001900_060--Hb_000083_130 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000347_110 Hb_000347_110 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_005181_180 Hb_005181_180 Hb_000702_060--Hb_005181_180 Hb_003125_180 Hb_003125_180 Hb_000684_360--Hb_003125_180 Hb_000684_360--Hb_053575_020 Hb_000684_360--Hb_169051_010 Hb_000157_070 Hb_000157_070 Hb_000684_360--Hb_000157_070 Hb_029879_120 Hb_029879_120 Hb_000684_360--Hb_029879_120 Hb_169051_010--Hb_003125_180 Hb_011032_010 Hb_011032_010 Hb_169051_010--Hb_011032_010 Hb_146510_010 Hb_146510_010 Hb_169051_010--Hb_146510_010 Hb_001322_180 Hb_001322_180 Hb_169051_010--Hb_001322_180 Hb_169051_010--Hb_053575_020 Hb_006717_070 Hb_006717_070 Hb_000362_110--Hb_006717_070 Hb_000395_220 Hb_000395_220 Hb_000362_110--Hb_000395_220 Hb_000362_110--Hb_001780_150 Hb_001799_190 Hb_001799_190 Hb_000362_110--Hb_001799_190 Hb_007426_140 Hb_007426_140 Hb_000362_110--Hb_007426_140 Hb_000977_010 Hb_000977_010 Hb_000362_110--Hb_000977_010 Hb_001486_060 Hb_001486_060 Hb_000793_040--Hb_001486_060 Hb_002928_120 Hb_002928_120 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_001493_020 Hb_001493_020 Hb_000793_040--Hb_001493_020 Hb_002420_010 Hb_002420_010 Hb_000793_040--Hb_002420_010 Hb_010253_020 Hb_010253_020 Hb_000083_130--Hb_010253_020 Hb_001625_010 Hb_001625_010 Hb_000083_130--Hb_001625_010 Hb_159411_010 Hb_159411_010 Hb_000083_130--Hb_159411_010 Hb_000778_020 Hb_000778_020 Hb_000083_130--Hb_000778_020 Hb_000413_230 Hb_000413_230 Hb_000083_130--Hb_000413_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.29648 19.5227 7.22008 23.4787 5.11985 6.28994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.61752 1.08132 0.633541 38.2945 9.65771

CAGE analysis