Hb_001901_090

Information

Type -
Description -
Location Contig1901: 91084-94586
Sequence    

Annotation

kegg
ID rcu:RCOM_0659680
description metal ion binding protein, putative
nr
ID XP_002526528.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKJ8
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_0659680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001901_090 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_000503_040 0.0395779198 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
3 Hb_003253_020 0.0574145152 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
4 Hb_042664_010 0.0610947664 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
5 Hb_000513_110 0.080465159 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
6 Hb_005464_040 0.0806053724 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_003891_060 0.0834162504 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
8 Hb_002534_080 0.0869064608 - - zinc finger protein, putative [Ricinus communis]
9 Hb_001544_040 0.0872488742 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
10 Hb_000712_070 0.0878331324 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000446_100 0.0942721401 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_000617_340 0.0946462128 - - respiratory burst oxidase B [Manihot esculenta]
13 Hb_002805_230 0.0952135587 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
14 Hb_010697_030 0.0969361258 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
15 Hb_007527_020 0.0970373224 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
16 Hb_007483_040 0.0974835564 - - PREDICTED: protein SRG1-like [Jatropha curcas]
17 Hb_008705_070 0.0975440701 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
18 Hb_000933_200 0.0978500751 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
19 Hb_000120_710 0.0986115725 - - unnamed protein product [Vitis vinifera]
20 Hb_001699_240 0.0987612843 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_001901_090 Hb_001901_090 Hb_000503_040 Hb_000503_040 Hb_001901_090--Hb_000503_040 Hb_003253_020 Hb_003253_020 Hb_001901_090--Hb_003253_020 Hb_042664_010 Hb_042664_010 Hb_001901_090--Hb_042664_010 Hb_000513_110 Hb_000513_110 Hb_001901_090--Hb_000513_110 Hb_005464_040 Hb_005464_040 Hb_001901_090--Hb_005464_040 Hb_003891_060 Hb_003891_060 Hb_001901_090--Hb_003891_060 Hb_005614_040 Hb_005614_040 Hb_000503_040--Hb_005614_040 Hb_007483_040 Hb_007483_040 Hb_000503_040--Hb_007483_040 Hb_010697_030 Hb_010697_030 Hb_000503_040--Hb_010697_030 Hb_000712_070 Hb_000712_070 Hb_000503_040--Hb_000712_070 Hb_001699_240 Hb_001699_240 Hb_000503_040--Hb_001699_240 Hb_000933_200 Hb_000933_200 Hb_003253_020--Hb_000933_200 Hb_000617_340 Hb_000617_340 Hb_003253_020--Hb_000617_340 Hb_001544_040 Hb_001544_040 Hb_003253_020--Hb_001544_040 Hb_003253_020--Hb_000513_110 Hb_000120_710 Hb_000120_710 Hb_003253_020--Hb_000120_710 Hb_006196_020 Hb_006196_020 Hb_042664_010--Hb_006196_020 Hb_002615_050 Hb_002615_050 Hb_042664_010--Hb_002615_050 Hb_039342_030 Hb_039342_030 Hb_042664_010--Hb_039342_030 Hb_002534_080 Hb_002534_080 Hb_042664_010--Hb_002534_080 Hb_008705_070 Hb_008705_070 Hb_042664_010--Hb_008705_070 Hb_000513_110--Hb_000120_710 Hb_000513_110--Hb_000617_340 Hb_000513_110--Hb_001544_040 Hb_007527_020 Hb_007527_020 Hb_000513_110--Hb_007527_020 Hb_000563_080 Hb_000563_080 Hb_005464_040--Hb_000563_080 Hb_001301_020 Hb_001301_020 Hb_005464_040--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_005464_040--Hb_000025_250 Hb_003188_020 Hb_003188_020 Hb_005464_040--Hb_003188_020 Hb_166232_010 Hb_166232_010 Hb_005464_040--Hb_166232_010 Hb_000446_100 Hb_000446_100 Hb_005464_040--Hb_000446_100 Hb_000155_140 Hb_000155_140 Hb_003891_060--Hb_000155_140 Hb_000352_080 Hb_000352_080 Hb_003891_060--Hb_000352_080 Hb_003891_060--Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_003891_060--Hb_004254_070 Hb_001456_040 Hb_001456_040 Hb_003891_060--Hb_001456_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.133371 0.0807718 0.0933029 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.43324 0

CAGE analysis