Hb_001902_030

Information

Type -
Description -
Location Contig1902: 30496-35534
Sequence    

Annotation

kegg
ID rcu:RCOM_1583110
description ubiquitin-protein ligase, putative
nr
ID XP_012090225.1
description PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
swissprot
ID Q8LF97
description SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1
trembl
ID A0A067JQJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26086 PE=4 SV=1
Gene Ontology
ID GO:0016874
description skp1-like protein 21 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18956: 32131-33395 , PASA_asmbl_18957: 33674-34035 , PASA_asmbl_18960: 35115-35850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_030 0.0 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
2 Hb_002263_020 0.0532412594 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
3 Hb_005291_050 0.0550402209 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
4 Hb_007657_010 0.057886615 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000331_260 0.0603253621 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
6 Hb_008847_030 0.0619600153 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
7 Hb_004109_080 0.0642671976 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
8 Hb_156279_020 0.0643662284 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
9 Hb_007416_340 0.0706397935 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000258_070 0.0707884665 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
11 Hb_000340_530 0.0708299284 - - hypothetical protein VITISV_016664 [Vitis vinifera]
12 Hb_000260_350 0.0710605873 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001946_400 0.072017024 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
14 Hb_003428_010 0.0722439444 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
15 Hb_006455_120 0.0722483589 - - n6-DNA-methyltransferase, putative [Ricinus communis]
16 Hb_000025_640 0.0726128533 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
17 Hb_011037_030 0.0730827493 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
18 Hb_000116_450 0.0735705187 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
19 Hb_033006_030 0.0739404362 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
20 Hb_001021_150 0.0744379614 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]

Gene co-expression network

sample Hb_001902_030 Hb_001902_030 Hb_002263_020 Hb_002263_020 Hb_001902_030--Hb_002263_020 Hb_005291_050 Hb_005291_050 Hb_001902_030--Hb_005291_050 Hb_007657_010 Hb_007657_010 Hb_001902_030--Hb_007657_010 Hb_000331_260 Hb_000331_260 Hb_001902_030--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_001902_030--Hb_008847_030 Hb_004109_080 Hb_004109_080 Hb_001902_030--Hb_004109_080 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_002263_020--Hb_004109_080 Hb_012498_010 Hb_012498_010 Hb_005291_050--Hb_012498_010 Hb_005291_050--Hb_004109_080 Hb_000156_010 Hb_000156_010 Hb_005291_050--Hb_000156_010 Hb_005291_050--Hb_002263_020 Hb_000254_090 Hb_000254_090 Hb_005291_050--Hb_000254_090 Hb_008221_180 Hb_008221_180 Hb_007657_010--Hb_008221_180 Hb_000346_060 Hb_000346_060 Hb_007657_010--Hb_000346_060 Hb_007657_010--Hb_002263_020 Hb_000343_250 Hb_000343_250 Hb_007657_010--Hb_000343_250 Hb_004097_070 Hb_004097_070 Hb_007657_010--Hb_004097_070 Hb_156279_020 Hb_156279_020 Hb_000331_260--Hb_156279_020 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000215_110 Hb_000215_110 Hb_000331_260--Hb_000215_110 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_004567_090 Hb_004567_090 Hb_004109_080--Hb_004567_090 Hb_004109_080--Hb_012498_010 Hb_000340_530 Hb_000340_530 Hb_004109_080--Hb_000340_530 Hb_000406_200 Hb_000406_200 Hb_004109_080--Hb_000406_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26209 3.569 3.6349 4.76007 4.37671 4.56092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52315 5.20532 4.63301 3.53309 5.38354

CAGE analysis