Hb_001902_050

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1902: 40527-45261
Sequence    

Annotation

kegg
ID rcu:RCOM_1583130
description hypothetical protein
nr
ID XP_012090229.1
description PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26088 PE=4 SV=1
Gene Ontology
ID GO:0046872
description c2h2-like zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18962: 40456-41540 , PASA_asmbl_18963: 41880-42035 , PASA_asmbl_18964: 43103-43917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_050 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
2 Hb_000700_090 0.0731374659 - - protein with unknown function [Ricinus communis]
3 Hb_005539_290 0.0780661292 - - unknown [Lotus japonicus]
4 Hb_006602_020 0.0874053667 - - unknown [Medicago truncatula]
5 Hb_000365_360 0.0907137146 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_004735_010 0.0930830304 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
7 Hb_026048_100 0.0954520637 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
8 Hb_063134_010 0.0986028854 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
9 Hb_006602_010 0.0986587421 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
10 Hb_024714_030 0.0992595167 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
11 Hb_010261_020 0.0999317605 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
12 Hb_000671_100 0.1005521871 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
13 Hb_032531_030 0.1019781715 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
14 Hb_066807_010 0.1023632521 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
15 Hb_009558_020 0.1027969125 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
16 Hb_007193_100 0.1046962925 - - syntaxin family protein [Populus trichocarpa]
17 Hb_002014_080 0.1053066216 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
18 Hb_001246_100 0.1080566128 - - Ras-related small GTP-binding family protein [Theobroma cacao]
19 Hb_098709_010 0.1083431792 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
20 Hb_000442_160 0.1090584053 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001902_050 Hb_001902_050 Hb_000700_090 Hb_000700_090 Hb_001902_050--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_001902_050--Hb_005539_290 Hb_006602_020 Hb_006602_020 Hb_001902_050--Hb_006602_020 Hb_000365_360 Hb_000365_360 Hb_001902_050--Hb_000365_360 Hb_004735_010 Hb_004735_010 Hb_001902_050--Hb_004735_010 Hb_026048_100 Hb_026048_100 Hb_001902_050--Hb_026048_100 Hb_000700_090--Hb_006602_020 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_005539_290--Hb_006602_020 Hb_002154_050 Hb_002154_050 Hb_005539_290--Hb_002154_050 Hb_005539_290--Hb_000700_090 Hb_006602_010 Hb_006602_010 Hb_005539_290--Hb_006602_010 Hb_000671_100 Hb_000671_100 Hb_005539_290--Hb_000671_100 Hb_006602_020--Hb_006602_010 Hb_000387_080 Hb_000387_080 Hb_006602_020--Hb_000387_080 Hb_005779_100 Hb_005779_100 Hb_006602_020--Hb_005779_100 Hb_000365_360--Hb_098709_010 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020 Hb_004735_010--Hb_006602_020 Hb_004735_010--Hb_006602_010 Hb_004735_010--Hb_000671_100 Hb_000442_160 Hb_000442_160 Hb_004735_010--Hb_000442_160 Hb_003638_030 Hb_003638_030 Hb_026048_100--Hb_003638_030 Hb_066807_010 Hb_066807_010 Hb_026048_100--Hb_066807_010 Hb_026048_100--Hb_006602_020 Hb_026048_100--Hb_000700_090 Hb_000057_060 Hb_000057_060 Hb_026048_100--Hb_000057_060 Hb_000172_400 Hb_000172_400 Hb_026048_100--Hb_000172_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.4155 7.36989 3.55771 10.9214 46.0571 82.898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.209 33.6998 47.6816 12.4649 5.32536

CAGE analysis