Hb_001902_070

Information

Type -
Description -
Location Contig1902: 56201-58798
Sequence    

Annotation

kegg
ID rcu:RCOM_1583150
description ATP binding protein, putative
nr
ID XP_002513685.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q5XVA8
description Uncharacterized protein At3g49055 OS=Arabidopsis thaliana GN=At3g49055 PE=2 SV=1
trembl
ID B9RIW6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1583150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_070 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_002890_210 0.1582941597 - - PREDICTED: vinorine synthase-like [Jatropha curcas]
3 Hb_186982_030 0.1649365742 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000395_140 0.1659765006 - - Oligopeptide transporter, putative [Ricinus communis]
5 Hb_054380_010 0.1763545336 - - -
6 Hb_001278_070 0.1794215214 - - hypothetical protein glysoja_020139 [Glycine soja]
7 Hb_002284_300 0.1821019505 - - -
8 Hb_000002_330 0.1835749907 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
9 Hb_001357_190 0.1852339522 - - ribonuclease III, putative [Ricinus communis]
10 Hb_128548_020 0.1873546649 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
11 Hb_011218_080 0.1895870985 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
12 Hb_004342_030 0.1917854838 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_000751_090 0.1923299611 - - -
14 Hb_117950_020 0.1925990147 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
15 Hb_000958_010 0.1931766807 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004221_050 0.1963721965 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
17 Hb_000920_270 0.1969029171 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
18 Hb_000500_280 0.1989969373 - - Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
19 Hb_005288_160 0.1995892742 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
20 Hb_001514_200 0.2024155073 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]

Gene co-expression network

sample Hb_001902_070 Hb_001902_070 Hb_002890_210 Hb_002890_210 Hb_001902_070--Hb_002890_210 Hb_186982_030 Hb_186982_030 Hb_001902_070--Hb_186982_030 Hb_000395_140 Hb_000395_140 Hb_001902_070--Hb_000395_140 Hb_054380_010 Hb_054380_010 Hb_001902_070--Hb_054380_010 Hb_001278_070 Hb_001278_070 Hb_001902_070--Hb_001278_070 Hb_002284_300 Hb_002284_300 Hb_001902_070--Hb_002284_300 Hb_003120_030 Hb_003120_030 Hb_002890_210--Hb_003120_030 Hb_000002_330 Hb_000002_330 Hb_002890_210--Hb_000002_330 Hb_000500_280 Hb_000500_280 Hb_002890_210--Hb_000500_280 Hb_054301_010 Hb_054301_010 Hb_002890_210--Hb_054301_010 Hb_002890_210--Hb_186982_030 Hb_005063_010 Hb_005063_010 Hb_186982_030--Hb_005063_010 Hb_000958_010 Hb_000958_010 Hb_186982_030--Hb_000958_010 Hb_000101_170 Hb_000101_170 Hb_186982_030--Hb_000101_170 Hb_002200_110 Hb_002200_110 Hb_186982_030--Hb_002200_110 Hb_004032_240 Hb_004032_240 Hb_186982_030--Hb_004032_240 Hb_001911_030 Hb_001911_030 Hb_186982_030--Hb_001911_030 Hb_001357_190 Hb_001357_190 Hb_000395_140--Hb_001357_190 Hb_006029_010 Hb_006029_010 Hb_000395_140--Hb_006029_010 Hb_002675_190 Hb_002675_190 Hb_000395_140--Hb_002675_190 Hb_000771_160 Hb_000771_160 Hb_000395_140--Hb_000771_160 Hb_000208_290 Hb_000208_290 Hb_000395_140--Hb_000208_290 Hb_000161_030 Hb_000161_030 Hb_000395_140--Hb_000161_030 Hb_153547_010 Hb_153547_010 Hb_054380_010--Hb_153547_010 Hb_001009_050 Hb_001009_050 Hb_054380_010--Hb_001009_050 Hb_001623_550 Hb_001623_550 Hb_054380_010--Hb_001623_550 Hb_117950_020 Hb_117950_020 Hb_054380_010--Hb_117950_020 Hb_054380_010--Hb_002284_300 Hb_000331_480 Hb_000331_480 Hb_054380_010--Hb_000331_480 Hb_000384_030 Hb_000384_030 Hb_001278_070--Hb_000384_030 Hb_111198_020 Hb_111198_020 Hb_001278_070--Hb_111198_020 Hb_001089_020 Hb_001089_020 Hb_001278_070--Hb_001089_020 Hb_007904_220 Hb_007904_220 Hb_001278_070--Hb_007904_220 Hb_001541_080 Hb_001541_080 Hb_001278_070--Hb_001541_080 Hb_002217_150 Hb_002217_150 Hb_001278_070--Hb_002217_150 Hb_000599_120 Hb_000599_120 Hb_002284_300--Hb_000599_120 Hb_150069_020 Hb_150069_020 Hb_002284_300--Hb_150069_020 Hb_000015_010 Hb_000015_010 Hb_002284_300--Hb_000015_010 Hb_002169_010 Hb_002169_010 Hb_002284_300--Hb_002169_010 Hb_010866_040 Hb_010866_040 Hb_002284_300--Hb_010866_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33149 0.378221 0.0788048 0.101754 4.536 2.61716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35933 1.44143 0.962683 2.72658 0.194933

CAGE analysis