Hb_001902_080

Information

Type -
Description -
Location Contig1902: 60665-60847
Sequence    

Annotation

kegg
ID rcu:RCOM_1583260
description hypothetical protein
nr
ID XP_002513686.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIW7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1583260 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ribosomal rna small subunit methyltransferase e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009954_040 0.1177102011 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
3 Hb_002918_200 0.1208250191 - - -
4 Hb_004108_230 0.1227736907 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
5 Hb_003175_040 0.1229800133 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
6 Hb_002701_240 0.125398558 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
7 Hb_000051_040 0.1260127695 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
8 Hb_008878_030 0.1272349232 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
9 Hb_011794_070 0.1276725048 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
10 Hb_000696_310 0.1278363491 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
11 Hb_001688_020 0.1284258282 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
12 Hb_005997_010 0.1284517992 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
13 Hb_000045_190 0.1285723778 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
14 Hb_000834_270 0.1288324116 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
15 Hb_000521_150 0.1296488208 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
16 Hb_001691_210 0.1299550255 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
17 Hb_003020_230 0.1307308524 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
18 Hb_000465_060 0.1317190321 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
19 Hb_000648_060 0.1323049326 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
20 Hb_001377_150 0.1326845822 - - hypothetical protein JCGZ_14266 [Jatropha curcas]

Gene co-expression network

sample Hb_001902_080 Hb_001902_080 Hb_009954_040 Hb_009954_040 Hb_001902_080--Hb_009954_040 Hb_002918_200 Hb_002918_200 Hb_001902_080--Hb_002918_200 Hb_004108_230 Hb_004108_230 Hb_001902_080--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_001902_080--Hb_003175_040 Hb_002701_240 Hb_002701_240 Hb_001902_080--Hb_002701_240 Hb_000051_040 Hb_000051_040 Hb_001902_080--Hb_000051_040 Hb_003020_230 Hb_003020_230 Hb_009954_040--Hb_003020_230 Hb_000300_610 Hb_000300_610 Hb_009954_040--Hb_000300_610 Hb_005997_010 Hb_005997_010 Hb_009954_040--Hb_005997_010 Hb_002685_190 Hb_002685_190 Hb_009954_040--Hb_002685_190 Hb_000061_320 Hb_000061_320 Hb_009954_040--Hb_000061_320 Hb_000103_090 Hb_000103_090 Hb_009954_040--Hb_000103_090 Hb_004837_140 Hb_004837_140 Hb_002918_200--Hb_004837_140 Hb_002918_200--Hb_004108_230 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_004108_230--Hb_003175_040 Hb_004108_230--Hb_004837_140 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_004375_100 Hb_004375_100 Hb_002701_240--Hb_004375_100 Hb_156947_010 Hb_156947_010 Hb_002701_240--Hb_156947_010 Hb_011150_010 Hb_011150_010 Hb_002701_240--Hb_011150_010 Hb_005618_140 Hb_005618_140 Hb_002701_240--Hb_005618_140 Hb_027073_040 Hb_027073_040 Hb_002701_240--Hb_027073_040 Hb_010068_020 Hb_010068_020 Hb_002701_240--Hb_010068_020 Hb_007021_020 Hb_007021_020 Hb_000051_040--Hb_007021_020 Hb_001711_030 Hb_001711_030 Hb_000051_040--Hb_001711_030 Hb_000922_270 Hb_000922_270 Hb_000051_040--Hb_000922_270 Hb_000261_460 Hb_000261_460 Hb_000051_040--Hb_000261_460 Hb_009404_020 Hb_009404_020 Hb_000051_040--Hb_009404_020 Hb_000051_040--Hb_003408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
445.312 44.8923 92.2627 51.5243 129.669 261.517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
464.781 507.372 306.249 221.573 102.236

CAGE analysis