Hb_001902_130

Information

Type -
Description -
Location Contig1902: 88515-90473
Sequence    

Annotation

kegg
ID mtr:MTR_1g100960
description 60S ribosomal protein L36
nr
ID XP_010108352.1
description 60S ribosomal protein L36-2 [Morus notabilis]
swissprot
ID O80929
description 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1
trembl
ID W9SA20
description 60S ribosomal protein L36 OS=Morus notabilis GN=L484_006508 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l36-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18969: 88550-90473 , PASA_asmbl_18970: 88836-88945
cDNA
(Sanger)
(ID:Location)		 015_J10.ab1: 88601-90364

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_130 0.0 - - 60S ribosomal protein L36-2 [Morus notabilis]
2 Hb_011224_060 0.1030854475 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
3 Hb_022181_030 0.1072631768 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
4 Hb_021419_020 0.1078057204 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
5 Hb_000562_030 0.1141067041 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002784_080 0.1169639814 - - PREDICTED: DNA replication complex GINS protein PSF3-like [Jatropha curcas]
7 Hb_004127_010 0.1204937529 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Malus domestica]
8 Hb_010315_060 0.1246969156 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
9 Hb_006360_030 0.1250114658 - - -
10 Hb_004122_040 0.1265241658 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
11 Hb_000690_190 0.1287137929 - - 40S ribosomal protein S7, putative [Ricinus communis]
12 Hb_002112_020 0.1299860272 - - 60S ribosomal protein L9, putative [Ricinus communis]
13 Hb_004116_060 0.1304130343 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
14 Hb_007441_210 0.1305850244 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
15 Hb_002296_050 0.1320709823 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
16 Hb_022132_050 0.1323533639 - - GTP binding protein, putative [Ricinus communis]
17 Hb_003292_040 0.1328460636 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
18 Hb_002811_260 0.1328677666 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_001195_260 0.1331454205 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
20 Hb_009486_150 0.1338605144 - - 60S ribosomal protein L37a-2 [Medicago truncatula]

Gene co-expression network

sample Hb_001902_130 Hb_001902_130 Hb_011224_060 Hb_011224_060 Hb_001902_130--Hb_011224_060 Hb_022181_030 Hb_022181_030 Hb_001902_130--Hb_022181_030 Hb_021419_020 Hb_021419_020 Hb_001902_130--Hb_021419_020 Hb_000562_030 Hb_000562_030 Hb_001902_130--Hb_000562_030 Hb_002784_080 Hb_002784_080 Hb_001902_130--Hb_002784_080 Hb_004127_010 Hb_004127_010 Hb_001902_130--Hb_004127_010 Hb_004032_430 Hb_004032_430 Hb_011224_060--Hb_004032_430 Hb_003050_200 Hb_003050_200 Hb_011224_060--Hb_003050_200 Hb_003292_040 Hb_003292_040 Hb_011224_060--Hb_003292_040 Hb_011970_030 Hb_011970_030 Hb_011224_060--Hb_011970_030 Hb_097783_020 Hb_097783_020 Hb_011224_060--Hb_097783_020 Hb_003935_020 Hb_003935_020 Hb_011224_060--Hb_003935_020 Hb_001357_150 Hb_001357_150 Hb_022181_030--Hb_001357_150 Hb_007451_010 Hb_007451_010 Hb_022181_030--Hb_007451_010 Hb_022132_050 Hb_022132_050 Hb_022181_030--Hb_022132_050 Hb_001123_030 Hb_001123_030 Hb_022181_030--Hb_001123_030 Hb_002119_080 Hb_002119_080 Hb_022181_030--Hb_002119_080 Hb_006588_070 Hb_006588_070 Hb_022181_030--Hb_006588_070 Hb_002811_260 Hb_002811_260 Hb_021419_020--Hb_002811_260 Hb_004787_060 Hb_004787_060 Hb_021419_020--Hb_004787_060 Hb_001504_020 Hb_001504_020 Hb_021419_020--Hb_001504_020 Hb_002112_020 Hb_002112_020 Hb_021419_020--Hb_002112_020 Hb_000286_070 Hb_000286_070 Hb_021419_020--Hb_000286_070 Hb_021419_020--Hb_003292_040 Hb_005773_060 Hb_005773_060 Hb_000562_030--Hb_005773_060 Hb_000562_030--Hb_002811_260 Hb_000160_060 Hb_000160_060 Hb_000562_030--Hb_000160_060 Hb_000359_150 Hb_000359_150 Hb_000562_030--Hb_000359_150 Hb_003544_020 Hb_003544_020 Hb_000562_030--Hb_003544_020 Hb_000690_190 Hb_000690_190 Hb_000562_030--Hb_000690_190 Hb_000377_070 Hb_000377_070 Hb_002784_080--Hb_000377_070 Hb_002784_080--Hb_011224_060 Hb_000265_240 Hb_000265_240 Hb_002784_080--Hb_000265_240 Hb_002784_080--Hb_000562_030 Hb_002784_080--Hb_003292_040 Hb_004127_010--Hb_011224_060 Hb_029921_040 Hb_029921_040 Hb_004127_010--Hb_029921_040 Hb_000093_160 Hb_000093_160 Hb_004127_010--Hb_000093_160 Hb_033153_070 Hb_033153_070 Hb_004127_010--Hb_033153_070 Hb_005618_160 Hb_005618_160 Hb_004127_010--Hb_005618_160 Hb_002739_050 Hb_002739_050 Hb_004127_010--Hb_002739_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.0768 41.2814 106.336 81.288 87.255 129.983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.0845 158.036 21.4862 36.9834 23.4906

CAGE analysis