Hb_001902_140

Information

Type -
Description -
Location Contig1902: 91135-100550
Sequence    

Annotation

kegg
ID rcu:RCOM_1583400
description hypothetical protein
nr
ID XP_012090241.1
description PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
swissprot
ID Q93Z32
description Signal peptide peptidase-like 1 OS=Arabidopsis thaliana GN=SPPL1 PE=2 SV=1
trembl
ID A0A067JRW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26095 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chloroplast thylakoid isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18971: 91222-96722 , PASA_asmbl_18972: 97011-100718 , PASA_asmbl_18973: 97011-100607
cDNA
(Sanger)
(ID:Location)		 006_C15.ab1: 98999-100619

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_140 0.0 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
2 Hb_000703_350 0.063104477 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
3 Hb_003050_220 0.0661341655 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
4 Hb_006420_080 0.0669286826 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_032202_190 0.0689119666 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
6 Hb_000684_470 0.0695656121 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
7 Hb_005463_100 0.071729539 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
8 Hb_006615_020 0.0724278095 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
9 Hb_029879_130 0.07278821 - - Derlin-2, putative [Ricinus communis]
10 Hb_000205_090 0.0737686719 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
11 Hb_005846_040 0.0737747604 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
12 Hb_002830_030 0.074844101 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
13 Hb_000260_030 0.0755731821 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
14 Hb_004109_170 0.0758126523 - - PREDICTED: probable ribokinase [Jatropha curcas]
15 Hb_005779_060 0.0760730121 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
16 Hb_000876_070 0.0766496079 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
17 Hb_008453_030 0.0766620078 - - Thioredoxin superfamily protein [Theobroma cacao]
18 Hb_002046_180 0.0774080359 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
19 Hb_000985_030 0.0778553145 - - PREDICTED: RRP15-like protein [Populus euphratica]
20 Hb_000030_030 0.0784964682 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]

Gene co-expression network

sample Hb_001902_140 Hb_001902_140 Hb_000703_350 Hb_000703_350 Hb_001902_140--Hb_000703_350 Hb_003050_220 Hb_003050_220 Hb_001902_140--Hb_003050_220 Hb_006420_080 Hb_006420_080 Hb_001902_140--Hb_006420_080 Hb_032202_190 Hb_032202_190 Hb_001902_140--Hb_032202_190 Hb_000684_470 Hb_000684_470 Hb_001902_140--Hb_000684_470 Hb_005463_100 Hb_005463_100 Hb_001902_140--Hb_005463_100 Hb_003605_090 Hb_003605_090 Hb_000703_350--Hb_003605_090 Hb_005846_040 Hb_005846_040 Hb_000703_350--Hb_005846_040 Hb_004109_170 Hb_004109_170 Hb_000703_350--Hb_004109_170 Hb_001300_150 Hb_001300_150 Hb_000703_350--Hb_001300_150 Hb_012019_010 Hb_012019_010 Hb_000703_350--Hb_012019_010 Hb_001579_220 Hb_001579_220 Hb_003050_220--Hb_001579_220 Hb_000015_040 Hb_000015_040 Hb_003050_220--Hb_000015_040 Hb_003050_220--Hb_032202_190 Hb_002107_030 Hb_002107_030 Hb_003050_220--Hb_002107_030 Hb_000958_110 Hb_000958_110 Hb_003050_220--Hb_000958_110 Hb_015778_010 Hb_015778_010 Hb_006420_080--Hb_015778_010 Hb_010883_050 Hb_010883_050 Hb_006420_080--Hb_010883_050 Hb_000982_080 Hb_000982_080 Hb_006420_080--Hb_000982_080 Hb_001489_080 Hb_001489_080 Hb_006420_080--Hb_001489_080 Hb_003697_040 Hb_003697_040 Hb_006420_080--Hb_003697_040 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_032202_190--Hb_000876_070 Hb_005618_170 Hb_005618_170 Hb_032202_190--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_032202_190--Hb_005305_080 Hb_007691_030 Hb_007691_030 Hb_032202_190--Hb_007691_030 Hb_005116_160 Hb_005116_160 Hb_000684_470--Hb_005116_160 Hb_005779_060 Hb_005779_060 Hb_000684_470--Hb_005779_060 Hb_156279_020 Hb_156279_020 Hb_000684_470--Hb_156279_020 Hb_002046_180 Hb_002046_180 Hb_000684_470--Hb_002046_180 Hb_000684_470--Hb_005463_100 Hb_009767_110 Hb_009767_110 Hb_000684_470--Hb_009767_110 Hb_005463_100--Hb_002046_180 Hb_005463_100--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_005463_100--Hb_002110_150 Hb_000003_250 Hb_000003_250 Hb_005463_100--Hb_000003_250 Hb_005463_100--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6172 7.53738 7.63394 8.95804 9.41564 8.0359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1817 16.0184 16.9375 10.6017 9.46633

CAGE analysis