Hb_001902_180

Information

Type -
Description -
Location Contig1902: 129013-130119
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13140g
description POPTRDRAFT_570477; hypothetical protein
nr
ID XP_011030114.1
description PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I4B4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13140g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18974: 129020-130309
cDNA
(Sanger)
(ID:Location)		 016_M07.ab1: 129020-130080

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_180 0.0 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
2 Hb_005993_070 0.0757504605 - - lipid binding protein, putative [Ricinus communis]
3 Hb_006446_060 0.0813537574 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
4 Hb_000101_050 0.085974658 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
5 Hb_009012_020 0.0861928525 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
6 Hb_005731_080 0.0950078863 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_000411_060 0.1064143152 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
8 Hb_001621_140 0.107168475 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
9 Hb_002311_050 0.1073775695 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
10 Hb_041769_010 0.1118904156 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_000487_170 0.1182860865 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_000365_300 0.1238822195 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
13 Hb_000522_040 0.1240171325 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
14 Hb_011819_030 0.1263024745 - - cytochrome P450, putative [Ricinus communis]
15 Hb_001141_170 0.1269147943 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
16 Hb_001080_310 0.1304302507 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
17 Hb_002234_150 0.1327595088 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
18 Hb_007769_010 0.1339763822 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_002553_120 0.1339849949 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
20 Hb_005257_020 0.1343070074 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001902_180 Hb_001902_180 Hb_005993_070 Hb_005993_070 Hb_001902_180--Hb_005993_070 Hb_006446_060 Hb_006446_060 Hb_001902_180--Hb_006446_060 Hb_000101_050 Hb_000101_050 Hb_001902_180--Hb_000101_050 Hb_009012_020 Hb_009012_020 Hb_001902_180--Hb_009012_020 Hb_005731_080 Hb_005731_080 Hb_001902_180--Hb_005731_080 Hb_000411_060 Hb_000411_060 Hb_001902_180--Hb_000411_060 Hb_005993_070--Hb_005731_080 Hb_005993_070--Hb_006446_060 Hb_002743_030 Hb_002743_030 Hb_005993_070--Hb_002743_030 Hb_005993_070--Hb_000101_050 Hb_125876_010 Hb_125876_010 Hb_005993_070--Hb_125876_010 Hb_006446_060--Hb_000101_050 Hb_041769_010 Hb_041769_010 Hb_006446_060--Hb_041769_010 Hb_001621_140 Hb_001621_140 Hb_006446_060--Hb_001621_140 Hb_161393_010 Hb_161393_010 Hb_006446_060--Hb_161393_010 Hb_005653_020 Hb_005653_020 Hb_006446_060--Hb_005653_020 Hb_000101_050--Hb_041769_010 Hb_000101_050--Hb_005731_080 Hb_059162_010 Hb_059162_010 Hb_000101_050--Hb_059162_010 Hb_000046_060 Hb_000046_060 Hb_009012_020--Hb_000046_060 Hb_110218_010 Hb_110218_010 Hb_009012_020--Hb_110218_010 Hb_004463_040 Hb_004463_040 Hb_009012_020--Hb_004463_040 Hb_000684_020 Hb_000684_020 Hb_009012_020--Hb_000684_020 Hb_009012_020--Hb_000411_060 Hb_005731_080--Hb_002743_030 Hb_012019_030 Hb_012019_030 Hb_005731_080--Hb_012019_030 Hb_006478_190 Hb_006478_190 Hb_005731_080--Hb_006478_190 Hb_004195_040 Hb_004195_040 Hb_005731_080--Hb_004195_040 Hb_000365_300 Hb_000365_300 Hb_005731_080--Hb_000365_300 Hb_000487_170 Hb_000487_170 Hb_000411_060--Hb_000487_170 Hb_000411_060--Hb_000101_050 Hb_008080_040 Hb_008080_040 Hb_000411_060--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_000411_060--Hb_001357_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 19.4153 0.73856 0.783958 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0627992 0 0 57.4216 2.3916

CAGE analysis