Hb_001902_200

Information

Type -
Description -
Location Contig1902: 149826-152777
Sequence    

Annotation

kegg
ID egr:104424418
description tubulin beta-1 chain
nr
ID XP_010035138.1
description PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
swissprot
ID P37392
description Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1
trembl
ID A0A058ZXC7
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00264 PE=3 SV=1
Gene Ontology
ID GO:0005794
description tubulin beta-1 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18977: 149620-152668 , PASA_asmbl_18978: 150877-151060
cDNA
(Sanger)
(ID:Location)		 050_J14.ab1: 151330-152668

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_200 0.0 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
2 Hb_001366_170 0.1194194379 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
3 Hb_004147_070 0.1411259115 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
4 Hb_003813_060 0.1483846802 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001369_630 0.1581104697 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
6 Hb_000086_290 0.1601108615 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
7 Hb_003408_010 0.1665714296 - - fructokinase [Manihot esculenta]
8 Hb_006711_090 0.1698739151 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
9 Hb_053709_040 0.1737254476 - - putative actin-97 protein [Linum usitatissimum]
10 Hb_004032_210 0.1763655478 - - conserved hypothetical protein [Ricinus communis]
11 Hb_034726_010 0.1765968958 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_031284_030 0.1766573792 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000742_160 0.1767015126 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
14 Hb_000935_040 0.1782779199 - - Uncharacterized protein isoform 2 [Theobroma cacao]
15 Hb_000703_280 0.1784361549 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
16 Hb_066778_010 0.1804598014 - - -
17 Hb_000011_310 0.180964474 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
18 Hb_006351_020 0.1812109224 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
19 Hb_000540_160 0.1820900298 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
20 Hb_000023_110 0.1877010167 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]

Gene co-expression network

sample Hb_001902_200 Hb_001902_200 Hb_001366_170 Hb_001366_170 Hb_001902_200--Hb_001366_170 Hb_004147_070 Hb_004147_070 Hb_001902_200--Hb_004147_070 Hb_003813_060 Hb_003813_060 Hb_001902_200--Hb_003813_060 Hb_001369_630 Hb_001369_630 Hb_001902_200--Hb_001369_630 Hb_000086_290 Hb_000086_290 Hb_001902_200--Hb_000086_290 Hb_003408_010 Hb_003408_010 Hb_001902_200--Hb_003408_010 Hb_053709_040 Hb_053709_040 Hb_001366_170--Hb_053709_040 Hb_003207_150 Hb_003207_150 Hb_001366_170--Hb_003207_150 Hb_002490_030 Hb_002490_030 Hb_001366_170--Hb_002490_030 Hb_006351_020 Hb_006351_020 Hb_001366_170--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001366_170--Hb_004032_210 Hb_004147_070--Hb_001366_170 Hb_008725_070 Hb_008725_070 Hb_004147_070--Hb_008725_070 Hb_000540_160 Hb_000540_160 Hb_004147_070--Hb_000540_160 Hb_004147_070--Hb_003408_010 Hb_001401_040 Hb_001401_040 Hb_004147_070--Hb_001401_040 Hb_004223_140 Hb_004223_140 Hb_003813_060--Hb_004223_140 Hb_006711_090 Hb_006711_090 Hb_003813_060--Hb_006711_090 Hb_003813_060--Hb_004032_210 Hb_003894_030 Hb_003894_030 Hb_003813_060--Hb_003894_030 Hb_011828_040 Hb_011828_040 Hb_003813_060--Hb_011828_040 Hb_000940_210 Hb_000940_210 Hb_003813_060--Hb_000940_210 Hb_000935_040 Hb_000935_040 Hb_001369_630--Hb_000935_040 Hb_000696_070 Hb_000696_070 Hb_001369_630--Hb_000696_070 Hb_002007_320 Hb_002007_320 Hb_001369_630--Hb_002007_320 Hb_000808_150 Hb_000808_150 Hb_001369_630--Hb_000808_150 Hb_003371_070 Hb_003371_070 Hb_001369_630--Hb_003371_070 Hb_000049_160 Hb_000049_160 Hb_001369_630--Hb_000049_160 Hb_003878_050 Hb_003878_050 Hb_000086_290--Hb_003878_050 Hb_000011_310 Hb_000011_310 Hb_000086_290--Hb_000011_310 Hb_048384_010 Hb_048384_010 Hb_000086_290--Hb_048384_010 Hb_000260_280 Hb_000260_280 Hb_000086_290--Hb_000260_280 Hb_032972_010 Hb_032972_010 Hb_000086_290--Hb_032972_010 Hb_000932_050 Hb_000932_050 Hb_003408_010--Hb_000932_050 Hb_001450_040 Hb_001450_040 Hb_003408_010--Hb_001450_040 Hb_003408_010--Hb_001401_040 Hb_000023_110 Hb_000023_110 Hb_003408_010--Hb_000023_110 Hb_000108_240 Hb_000108_240 Hb_003408_010--Hb_000108_240 Hb_008725_080 Hb_008725_080 Hb_003408_010--Hb_008725_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98582 2.54684 34.1257 68.6982 1.74217 5.93816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.34586 7.1992 14.5451 12.1275 11.28

CAGE analysis