Hb_001904_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig1904: 93797-94666
Sequence    

Annotation

kegg
ID rcu:RCOM_1361210
description DNA binding protein, putative
nr
ID XP_002532067.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q6J9S1
description Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1
trembl
ID B9T1F0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1361210 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001904_040 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_011113_020 0.326104161 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
3 Hb_000624_020 0.3278684424 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
4 Hb_178817_010 0.341751284 - - protease [Gossypium hirsutum]
5 Hb_012500_010 0.3486989837 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_000894_050 0.3501018439 - - -
7 Hb_096257_010 0.3501282093 - - -
8 Hb_180003_010 0.3505672748 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
9 Hb_030449_010 0.3506324259 - - -
10 Hb_003673_030 0.3508798052 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
11 Hb_021470_010 0.3510734479 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_004409_010 0.3514084553 - - -
13 Hb_141990_060 0.3516221538 - - -
14 Hb_003206_040 0.3517064543 - - Auxin efflux carrier component, putative [Ricinus communis]
15 Hb_007586_010 0.351789223 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
16 Hb_020248_010 0.3523840769 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
17 Hb_000486_070 0.3555734096 - - hypothetical protein JCGZ_25069 [Jatropha curcas]
18 Hb_123056_010 0.3584039518 - - -
19 Hb_001703_100 0.3665156763 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
20 Hb_002269_010 0.3684233642 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]

Gene co-expression network

sample Hb_001904_040 Hb_001904_040 Hb_011113_020 Hb_011113_020 Hb_001904_040--Hb_011113_020 Hb_000624_020 Hb_000624_020 Hb_001904_040--Hb_000624_020 Hb_178817_010 Hb_178817_010 Hb_001904_040--Hb_178817_010 Hb_012500_010 Hb_012500_010 Hb_001904_040--Hb_012500_010 Hb_000894_050 Hb_000894_050 Hb_001904_040--Hb_000894_050 Hb_096257_010 Hb_096257_010 Hb_001904_040--Hb_096257_010 Hb_011113_020--Hb_178817_010 Hb_003206_040 Hb_003206_040 Hb_011113_020--Hb_003206_040 Hb_141990_060 Hb_141990_060 Hb_011113_020--Hb_141990_060 Hb_004409_010 Hb_004409_010 Hb_011113_020--Hb_004409_010 Hb_021470_010 Hb_021470_010 Hb_011113_020--Hb_021470_010 Hb_030449_010 Hb_030449_010 Hb_011113_020--Hb_030449_010 Hb_121304_020 Hb_121304_020 Hb_000624_020--Hb_121304_020 Hb_000663_030 Hb_000663_030 Hb_000624_020--Hb_000663_030 Hb_002400_370 Hb_002400_370 Hb_000624_020--Hb_002400_370 Hb_001195_080 Hb_001195_080 Hb_000624_020--Hb_001195_080 Hb_004968_010 Hb_004968_010 Hb_000624_020--Hb_004968_010 Hb_010423_010 Hb_010423_010 Hb_000624_020--Hb_010423_010 Hb_003673_030 Hb_003673_030 Hb_178817_010--Hb_003673_030 Hb_029475_010 Hb_029475_010 Hb_178817_010--Hb_029475_010 Hb_006711_050 Hb_006711_050 Hb_178817_010--Hb_006711_050 Hb_012702_030 Hb_012702_030 Hb_178817_010--Hb_012702_030 Hb_001140_340 Hb_001140_340 Hb_178817_010--Hb_001140_340 Hb_009742_010 Hb_009742_010 Hb_012500_010--Hb_009742_010 Hb_184798_040 Hb_184798_040 Hb_012500_010--Hb_184798_040 Hb_085922_010 Hb_085922_010 Hb_012500_010--Hb_085922_010 Hb_000504_250 Hb_000504_250 Hb_012500_010--Hb_000504_250 Hb_137543_010 Hb_137543_010 Hb_012500_010--Hb_137543_010 Hb_155880_010 Hb_155880_010 Hb_012500_010--Hb_155880_010 Hb_000894_050--Hb_096257_010 Hb_180003_010 Hb_180003_010 Hb_000894_050--Hb_180003_010 Hb_000894_050--Hb_030449_010 Hb_000894_050--Hb_021470_010 Hb_000894_050--Hb_004409_010 Hb_000894_050--Hb_141990_060 Hb_096257_010--Hb_180003_010 Hb_096257_010--Hb_030449_010 Hb_096257_010--Hb_021470_010 Hb_096257_010--Hb_004409_010 Hb_096257_010--Hb_141990_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197683 0.189645 0 0.0452648 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0475494 0 0.019194 0

CAGE analysis