Hb_001904_050

Information

Type -
Description -
Location Contig1904: 95281-98291
Sequence    

Annotation

kegg
ID rcu:RCOM_1361220
description tubulin alpha chain, putative
nr
ID AGD80034.1
description alpha-tubulin 1 [Hevea brasiliensis]
swissprot
ID B9DHQ0
description Tubulin alpha-5 chain OS=Arabidopsis thaliana GN=TUBA5 PE=1 SV=2
trembl
ID L7XDM4
description Alpha-tubulin 1 OS=Hevea brasiliensis GN=TUA1 PE=2 SV=1
Gene Ontology
ID GO:0005618
description tubulin alpha-3 chain-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18987: 95287-98348 , PASA_asmbl_18989: 95475-117441
cDNA
(Sanger)
(ID:Location)		 033_O01.ab1: 96606-98310 , 052_H04.ab1: 97090-98304

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001904_050 0.0 - - alpha-tubulin 1 [Hevea brasiliensis]
2 Hb_031527_110 0.113485916 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
3 Hb_006711_090 0.1241707344 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
4 Hb_000742_020 0.1265275674 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_154038_020 0.1304290396 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
6 Hb_007441_080 0.1340601016 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
7 Hb_000181_350 0.1361209122 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
8 Hb_003549_080 0.1361356387 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
9 Hb_007101_110 0.1387546001 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
10 Hb_000012_080 0.1429477405 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
11 Hb_000703_280 0.1438699276 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
12 Hb_000244_170 0.1445249713 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
13 Hb_000935_040 0.1446558967 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_000107_510 0.1448613387 - - phosphate transporter [Manihot esculenta]
15 Hb_003602_060 0.1486600532 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
16 Hb_000765_060 0.1494949544 - - Alcohol dehydrogenase-like 6 [Glycine soja]
17 Hb_000152_440 0.1502631162 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
18 Hb_000962_070 0.1508615705 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_002174_040 0.1512319253 - - DNAJ heat shock family protein [Theobroma cacao]
20 Hb_001663_040 0.1520300503 - - hypothetical protein B456_007G162000 [Gossypium raimondii]

Gene co-expression network

sample Hb_001904_050 Hb_001904_050 Hb_031527_110 Hb_031527_110 Hb_001904_050--Hb_031527_110 Hb_006711_090 Hb_006711_090 Hb_001904_050--Hb_006711_090 Hb_000742_020 Hb_000742_020 Hb_001904_050--Hb_000742_020 Hb_154038_020 Hb_154038_020 Hb_001904_050--Hb_154038_020 Hb_007441_080 Hb_007441_080 Hb_001904_050--Hb_007441_080 Hb_000181_350 Hb_000181_350 Hb_001904_050--Hb_000181_350 Hb_002174_040 Hb_002174_040 Hb_031527_110--Hb_002174_040 Hb_000962_070 Hb_000962_070 Hb_031527_110--Hb_000962_070 Hb_031527_110--Hb_000181_350 Hb_042083_040 Hb_042083_040 Hb_031527_110--Hb_042083_040 Hb_031527_110--Hb_007441_080 Hb_002007_320 Hb_002007_320 Hb_006711_090--Hb_002007_320 Hb_000062_090 Hb_000062_090 Hb_006711_090--Hb_000062_090 Hb_000935_040 Hb_000935_040 Hb_006711_090--Hb_000935_040 Hb_004158_020 Hb_004158_020 Hb_006711_090--Hb_004158_020 Hb_188281_030 Hb_188281_030 Hb_006711_090--Hb_188281_030 Hb_013394_050 Hb_013394_050 Hb_000742_020--Hb_013394_050 Hb_001609_040 Hb_001609_040 Hb_000742_020--Hb_001609_040 Hb_000742_020--Hb_007441_080 Hb_005993_010 Hb_005993_010 Hb_000742_020--Hb_005993_010 Hb_000069_640 Hb_000069_640 Hb_000742_020--Hb_000069_640 Hb_000244_170 Hb_000244_170 Hb_000742_020--Hb_000244_170 Hb_003602_060 Hb_003602_060 Hb_154038_020--Hb_003602_060 Hb_001767_060 Hb_001767_060 Hb_154038_020--Hb_001767_060 Hb_065525_120 Hb_065525_120 Hb_154038_020--Hb_065525_120 Hb_009780_050 Hb_009780_050 Hb_154038_020--Hb_009780_050 Hb_093458_010 Hb_093458_010 Hb_154038_020--Hb_093458_010 Hb_002110_100 Hb_002110_100 Hb_007441_080--Hb_002110_100 Hb_000684_030 Hb_000684_030 Hb_007441_080--Hb_000684_030 Hb_007441_080--Hb_003602_060 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_003875_030 Hb_003875_030 Hb_007441_080--Hb_003875_030 Hb_001663_040 Hb_001663_040 Hb_000181_350--Hb_001663_040 Hb_007101_110 Hb_007101_110 Hb_000181_350--Hb_007101_110 Hb_000057_110 Hb_000057_110 Hb_000181_350--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000181_350--Hb_000200_300 Hb_000181_350--Hb_000684_030 Hb_000062_330 Hb_000062_330 Hb_000181_350--Hb_000062_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7895 11.932 118.973 148.116 12.3737 14.0602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3663 64.3372 73.785 22.0274 76.341

CAGE analysis