Hb_001907_060

Information

Type -
Description -
Location Contig1907: 136203-150978
Sequence    

Annotation

kegg
ID rcu:RCOM_0963890
description structural maintenance of chromosomes 5 smc5, putative
nr
ID XP_012065615.1
description PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
swissprot
ID Q9LFS8
description Structural maintenance of chromosomes protein 5 OS=Arabidopsis thaliana GN=SMC5 PE=2 SV=1
trembl
ID A0A067LH91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16866 PE=4 SV=1
Gene Ontology
ID GO:0009506
description structural maintenance of chromosomes protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19011: 136344-140336 , PASA_asmbl_19012: 143386-151001 , PASA_asmbl_19013: 146432-146531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001907_060 0.0 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
2 Hb_101151_020 0.092554573 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000792_110 0.0930920503 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
4 Hb_007348_030 0.0983162729 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
5 Hb_000211_090 0.1180340752 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
6 Hb_000608_340 0.1185101576 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
7 Hb_002374_150 0.1212450486 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
8 Hb_010189_010 0.1215128937 - - -
9 Hb_031069_020 0.121711748 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
10 Hb_000890_220 0.1222037086 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
11 Hb_000779_040 0.1230399061 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
12 Hb_000413_170 0.124996755 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
13 Hb_002918_070 0.1251933595 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
14 Hb_001901_080 0.1317738732 - - PREDICTED: xylose isomerase [Jatropha curcas]
15 Hb_035360_010 0.1321090431 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
16 Hb_001278_060 0.1329337311 - - nucleotide binding protein, putative [Ricinus communis]
17 Hb_078477_040 0.133662595 - - nuclear movement protein nudc, putative [Ricinus communis]
18 Hb_001396_290 0.1336913723 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
19 Hb_000016_280 0.1341221717 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
20 Hb_002612_010 0.1347455942 - - hypothetical protein JCGZ_19269 [Jatropha curcas]

Gene co-expression network

sample Hb_001907_060 Hb_001907_060 Hb_101151_020 Hb_101151_020 Hb_001907_060--Hb_101151_020 Hb_000792_110 Hb_000792_110 Hb_001907_060--Hb_000792_110 Hb_007348_030 Hb_007348_030 Hb_001907_060--Hb_007348_030 Hb_000211_090 Hb_000211_090 Hb_001907_060--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_001907_060--Hb_000608_340 Hb_002374_150 Hb_002374_150 Hb_001907_060--Hb_002374_150 Hb_000016_280 Hb_000016_280 Hb_101151_020--Hb_000016_280 Hb_000890_220 Hb_000890_220 Hb_101151_020--Hb_000890_220 Hb_013753_010 Hb_013753_010 Hb_101151_020--Hb_013753_010 Hb_000779_040 Hb_000779_040 Hb_101151_020--Hb_000779_040 Hb_101151_020--Hb_007348_030 Hb_012760_200 Hb_012760_200 Hb_101151_020--Hb_012760_200 Hb_000792_110--Hb_000211_090 Hb_000792_110--Hb_000779_040 Hb_000792_110--Hb_000890_220 Hb_035360_010 Hb_035360_010 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_000792_110--Hb_012760_200 Hb_000244_240 Hb_000244_240 Hb_007348_030--Hb_000244_240 Hb_000365_060 Hb_000365_060 Hb_007348_030--Hb_000365_060 Hb_000120_510 Hb_000120_510 Hb_007348_030--Hb_000120_510 Hb_001278_060 Hb_001278_060 Hb_007348_030--Hb_001278_060 Hb_001301_210 Hb_001301_210 Hb_007348_030--Hb_001301_210 Hb_000211_090--Hb_000779_040 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_000211_090--Hb_000890_220 Hb_003666_050 Hb_003666_050 Hb_000211_090--Hb_003666_050 Hb_003673_020 Hb_003673_020 Hb_000211_090--Hb_003673_020 Hb_000608_340--Hb_000779_040 Hb_019871_020 Hb_019871_020 Hb_000608_340--Hb_019871_020 Hb_000608_340--Hb_002374_150 Hb_000608_340--Hb_003666_050 Hb_000619_070 Hb_000619_070 Hb_000608_340--Hb_000619_070 Hb_000608_340--Hb_035360_010 Hb_000212_280 Hb_000212_280 Hb_002374_150--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002374_150--Hb_001486_120 Hb_002374_150--Hb_012760_200 Hb_000573_040 Hb_000573_040 Hb_002374_150--Hb_000573_040 Hb_001582_030 Hb_001582_030 Hb_002374_150--Hb_001582_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2741 16.8362 7.04468 4.13904 37.6286 45.5607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.61603 1.92386 2.70953 4.83955 4.4707

CAGE analysis