Hb_001910_010

Information

Type -
Description -
Location Contig1910: 19383-24568
Sequence    

Annotation

kegg
ID rcu:RCOM_0692450
description Dual specificity protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002522161.1
description Dual specificity protein phosphatase, putative [Ricinus communis]
swissprot
ID Q9UNI6
description Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12 PE=1 SV=1
trembl
ID B9S842
description Dual specificity protein phosphatase, putative OS=Ricinus communis GN=RCOM_0692450 PE=4 SV=1
Gene Ontology
ID GO:0004725
description dual specificity protein phosphatase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19047: 19036-24520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001910_010 0.0 - - Dual specificity protein phosphatase, putative [Ricinus communis]
2 Hb_094970_010 0.0708641715 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
3 Hb_006059_030 0.0848384678 - - glutamate dehydrogenase, putative [Ricinus communis]
4 Hb_005976_080 0.0957046958 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
5 Hb_003376_250 0.0990962191 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
6 Hb_000327_180 0.1007733707 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
7 Hb_000309_050 0.1024493963 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
8 Hb_001195_200 0.1027123743 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
9 Hb_001307_030 0.1037749645 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
10 Hb_005601_040 0.1037855916 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
11 Hb_000120_080 0.1044256784 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
12 Hb_000189_550 0.1048246163 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
13 Hb_000982_080 0.1059014054 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
14 Hb_007218_120 0.10649405 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
15 Hb_004480_100 0.1073469366 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
16 Hb_000665_140 0.1081944735 - - PREDICTED: protein MEMO1 [Jatropha curcas]
17 Hb_001541_120 0.1083784026 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
18 Hb_000159_130 0.1087122847 - - RNA binding protein, putative [Ricinus communis]
19 Hb_001629_030 0.1092051786 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
20 Hb_000656_010 0.1101277413 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001910_010 Hb_001910_010 Hb_094970_010 Hb_094970_010 Hb_001910_010--Hb_094970_010 Hb_006059_030 Hb_006059_030 Hb_001910_010--Hb_006059_030 Hb_005976_080 Hb_005976_080 Hb_001910_010--Hb_005976_080 Hb_003376_250 Hb_003376_250 Hb_001910_010--Hb_003376_250 Hb_000327_180 Hb_000327_180 Hb_001910_010--Hb_000327_180 Hb_000309_050 Hb_000309_050 Hb_001910_010--Hb_000309_050 Hb_094970_010--Hb_006059_030 Hb_000120_080 Hb_000120_080 Hb_094970_010--Hb_000120_080 Hb_000139_340 Hb_000139_340 Hb_094970_010--Hb_000139_340 Hb_003207_010 Hb_003207_010 Hb_094970_010--Hb_003207_010 Hb_001493_150 Hb_001493_150 Hb_094970_010--Hb_001493_150 Hb_012393_030 Hb_012393_030 Hb_006059_030--Hb_012393_030 Hb_000364_050 Hb_000364_050 Hb_006059_030--Hb_000364_050 Hb_012733_040 Hb_012733_040 Hb_006059_030--Hb_012733_040 Hb_006059_030--Hb_005976_080 Hb_000107_270 Hb_000107_270 Hb_006059_030--Hb_000107_270 Hb_001195_400 Hb_001195_400 Hb_006059_030--Hb_001195_400 Hb_015675_040 Hb_015675_040 Hb_005976_080--Hb_015675_040 Hb_004159_020 Hb_004159_020 Hb_005976_080--Hb_004159_020 Hb_000656_010 Hb_000656_010 Hb_005976_080--Hb_000656_010 Hb_003878_150 Hb_003878_150 Hb_005976_080--Hb_003878_150 Hb_027073_020 Hb_027073_020 Hb_005976_080--Hb_027073_020 Hb_005976_080--Hb_001195_400 Hb_000982_080 Hb_000982_080 Hb_003376_250--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_003376_250--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_003376_250--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_003376_250--Hb_001195_200 Hb_003376_250--Hb_000327_180 Hb_007416_060 Hb_007416_060 Hb_003376_250--Hb_007416_060 Hb_003847_030 Hb_003847_030 Hb_000327_180--Hb_003847_030 Hb_002799_070 Hb_002799_070 Hb_000327_180--Hb_002799_070 Hb_000327_180--Hb_001195_200 Hb_005054_110 Hb_005054_110 Hb_000327_180--Hb_005054_110 Hb_000603_080 Hb_000603_080 Hb_000327_180--Hb_000603_080 Hb_000185_220 Hb_000185_220 Hb_000309_050--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_000309_050--Hb_003206_110 Hb_004480_100 Hb_004480_100 Hb_000309_050--Hb_004480_100 Hb_001975_150 Hb_001975_150 Hb_000309_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_000309_050--Hb_000504_180 Hb_000297_120 Hb_000297_120 Hb_000309_050--Hb_000297_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.49232 11.0863 15.8938 20.646 11.8572 9.58782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7543 24.9209 25.2594 31.2979 34.4624

CAGE analysis