Hb_001911_030

Information

Type -
Description -
Location Contig1911: 78404-80846
Sequence    

Annotation

kegg
ID rcu:RCOM_1590790
description Disease resistance protein RPP13, putative (EC:3.1.3.16)
nr
ID XP_012071989.1
description PREDICTED: disease resistance RPP8-like protein 3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R7D8
description Disease resistance protein RPP13, putative OS=Ricinus communis GN=RCOM_1590790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001911_030 0.0 - - PREDICTED: disease resistance RPP8-like protein 3 [Jatropha curcas]
2 Hb_003786_110 0.1264731722 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
3 Hb_005063_010 0.1305010866 - - HEV1.1 [Hevea brasiliensis]
4 Hb_000329_610 0.1332861268 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000853_370 0.1415797875 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
6 Hb_186982_030 0.1518235233 - - conserved hypothetical protein [Ricinus communis]
7 Hb_026048_090 0.1590665707 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002391_110 0.1604071077 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
9 Hb_007178_010 0.1612637473 - - pseudo-hevein [Hevea brasiliensis]
10 Hb_001014_220 0.1620235401 - - PREDICTED: mediator-associated protein 2 [Jatropha curcas]
11 Hb_017134_040 0.1642316428 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
12 Hb_002232_180 0.1679260854 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
13 Hb_002067_160 0.1680887526 - - Protein MLO, putative [Ricinus communis]
14 Hb_004156_060 0.1700716523 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
15 Hb_000500_280 0.173076261 - - Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
16 Hb_003627_020 0.1731244801 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
17 Hb_002200_110 0.1741995256 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003656_030 0.1742607398 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
19 Hb_001504_170 0.1749236267 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
20 Hb_002681_140 0.1791571459 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001911_030 Hb_001911_030 Hb_003786_110 Hb_003786_110 Hb_001911_030--Hb_003786_110 Hb_005063_010 Hb_005063_010 Hb_001911_030--Hb_005063_010 Hb_000329_610 Hb_000329_610 Hb_001911_030--Hb_000329_610 Hb_000853_370 Hb_000853_370 Hb_001911_030--Hb_000853_370 Hb_186982_030 Hb_186982_030 Hb_001911_030--Hb_186982_030 Hb_026048_090 Hb_026048_090 Hb_001911_030--Hb_026048_090 Hb_003786_110--Hb_000329_610 Hb_017134_040 Hb_017134_040 Hb_003786_110--Hb_017134_040 Hb_001504_170 Hb_001504_170 Hb_003786_110--Hb_001504_170 Hb_007178_010 Hb_007178_010 Hb_003786_110--Hb_007178_010 Hb_003786_110--Hb_026048_090 Hb_002067_160 Hb_002067_160 Hb_003786_110--Hb_002067_160 Hb_005063_010--Hb_017134_040 Hb_005063_010--Hb_186982_030 Hb_005063_010--Hb_000329_610 Hb_005063_010--Hb_026048_090 Hb_002038_060 Hb_002038_060 Hb_005063_010--Hb_002038_060 Hb_003627_020 Hb_003627_020 Hb_005063_010--Hb_003627_020 Hb_000329_610--Hb_017134_040 Hb_000329_610--Hb_000853_370 Hb_000329_610--Hb_001504_170 Hb_180992_010 Hb_180992_010 Hb_000329_610--Hb_180992_010 Hb_003507_020 Hb_003507_020 Hb_000329_610--Hb_003507_020 Hb_000853_370--Hb_003507_020 Hb_000853_370--Hb_003627_020 Hb_014067_010 Hb_014067_010 Hb_000853_370--Hb_014067_010 Hb_050964_020 Hb_050964_020 Hb_000853_370--Hb_050964_020 Hb_000853_370--Hb_007178_010 Hb_154381_050 Hb_154381_050 Hb_000853_370--Hb_154381_050 Hb_000958_010 Hb_000958_010 Hb_186982_030--Hb_000958_010 Hb_000101_170 Hb_000101_170 Hb_186982_030--Hb_000101_170 Hb_002200_110 Hb_002200_110 Hb_186982_030--Hb_002200_110 Hb_004032_240 Hb_004032_240 Hb_186982_030--Hb_004032_240 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_127979_010 Hb_127979_010 Hb_026048_090--Hb_127979_010 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_026048_090--Hb_000057_060 Hb_001433_170 Hb_001433_170 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.828809 0 0.0556983 0.0451068 0.829722 1.01077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.331505 0.521527 0.363485 0.274296 0

CAGE analysis