Hb_001912_110

Information

Type -
Description -
Location Contig1912: 261051-266910
Sequence    

Annotation

kegg
ID tcc:TCM_020446
description Cytochrome c oxidase 10
nr
ID XP_012068424.1
description PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID O64886
description Protoheme IX farnesyltransferase, mitochondrial OS=Arabidopsis thaliana GN=COX10 PE=2 SV=4
trembl
ID A0A067LAI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03610 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protoheme ix mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19090: 261141-261369 , PASA_asmbl_19092: 261436-267010 , PASA_asmbl_19093: 264066-264722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001912_110 0.0 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000096_140 0.0647964257 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000260_010 0.0674283787 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
4 Hb_027380_220 0.0755283602 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
5 Hb_000260_350 0.0762571646 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000349_260 0.0762869813 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
7 Hb_000925_130 0.0767215574 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
8 Hb_001377_490 0.0797363183 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
9 Hb_019181_040 0.0797603081 - - component of oligomeric golgi complex, putative [Ricinus communis]
10 Hb_005291_050 0.0799368648 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
11 Hb_004108_160 0.0809427153 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
12 Hb_002809_050 0.081295007 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
13 Hb_001163_100 0.0813715285 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_000174_270 0.0822726532 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
15 Hb_001679_050 0.0825625444 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
16 Hb_029510_050 0.0845692781 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
17 Hb_000340_530 0.0857392384 - - hypothetical protein VITISV_016664 [Vitis vinifera]
18 Hb_001696_010 0.0857553075 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
19 Hb_001902_030 0.086149873 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
20 Hb_004109_080 0.0871532448 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001912_110 Hb_001912_110 Hb_000096_140 Hb_000096_140 Hb_001912_110--Hb_000096_140 Hb_000260_010 Hb_000260_010 Hb_001912_110--Hb_000260_010 Hb_027380_220 Hb_027380_220 Hb_001912_110--Hb_027380_220 Hb_000260_350 Hb_000260_350 Hb_001912_110--Hb_000260_350 Hb_000349_260 Hb_000349_260 Hb_001912_110--Hb_000349_260 Hb_000925_130 Hb_000925_130 Hb_001912_110--Hb_000925_130 Hb_004108_160 Hb_004108_160 Hb_000096_140--Hb_004108_160 Hb_000027_260 Hb_000027_260 Hb_000096_140--Hb_000027_260 Hb_001352_020 Hb_001352_020 Hb_000096_140--Hb_001352_020 Hb_010515_020 Hb_010515_020 Hb_000096_140--Hb_010515_020 Hb_002830_010 Hb_002830_010 Hb_000096_140--Hb_002830_010 Hb_001163_100 Hb_001163_100 Hb_000260_010--Hb_001163_100 Hb_000260_010--Hb_027380_220 Hb_002809_050 Hb_002809_050 Hb_000260_010--Hb_002809_050 Hb_001377_490 Hb_001377_490 Hb_000260_010--Hb_001377_490 Hb_164010_030 Hb_164010_030 Hb_000260_010--Hb_164010_030 Hb_001936_130 Hb_001936_130 Hb_027380_220--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_027380_220--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_027380_220--Hb_029879_070 Hb_001004_070 Hb_001004_070 Hb_027380_220--Hb_001004_070 Hb_001511_060 Hb_001511_060 Hb_000260_350--Hb_001511_060 Hb_000260_350--Hb_000349_260 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_093458_040 Hb_093458_040 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_168978_010 Hb_168978_010 Hb_000260_350--Hb_168978_010 Hb_000637_110 Hb_000637_110 Hb_000349_260--Hb_000637_110 Hb_000088_170 Hb_000088_170 Hb_000349_260--Hb_000088_170 Hb_000349_260--Hb_001511_060 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_001473_160 Hb_001473_160 Hb_000349_260--Hb_001473_160 Hb_000288_030 Hb_000288_030 Hb_000925_130--Hb_000288_030 Hb_013358_040 Hb_013358_040 Hb_000925_130--Hb_013358_040 Hb_000928_070 Hb_000928_070 Hb_000925_130--Hb_000928_070 Hb_000925_130--Hb_000349_260 Hb_000345_310 Hb_000345_310 Hb_000925_130--Hb_000345_310 Hb_000375_350 Hb_000375_350 Hb_000925_130--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.17663 12.5293 11.1838 18.5567 16.3244 11.4322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2664 13.8534 20.9679 11.5375 17.1854

CAGE analysis