Hb_001916_010

Information

Type -
Description -
Location Contig1916: 24844-27198
Sequence    

Annotation

kegg
ID cit:102609073
description receptor-like protein 12-like
nr
ID CAN80989.1
description hypothetical protein VITISV_021527 [Vitis vinifera]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A5BBW5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_010 0.0 - - hypothetical protein VITISV_021527 [Vitis vinifera]
2 Hb_004907_040 0.0688956312 - - hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
3 Hb_122741_010 0.082464374 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
4 Hb_000134_100 0.1027605075 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
5 Hb_002108_020 0.165403211 - - hypothetical protein JCGZ_16012 [Jatropha curcas]
6 Hb_012675_020 0.1964710494 - - hypothetical protein CISIN_1g018227mg [Citrus sinensis]
7 Hb_009803_010 0.2027075906 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
8 Hb_158296_010 0.2393516714 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
9 Hb_002636_140 0.2419592362 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
10 Hb_001208_020 0.2425216265 - - -
11 Hb_010367_020 0.242725802 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
12 Hb_060585_010 0.2429139111 - - unnamed protein product [Coffea canephora]
13 Hb_012539_090 0.245907375 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
14 Hb_000562_010 0.2612262501 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
15 Hb_007416_080 0.2684047354 - - -
16 Hb_000577_070 0.2764659222 - - -
17 Hb_179286_010 0.2789489539 - - STRUWWELPETER family protein [Populus trichocarpa]
18 Hb_022425_020 0.2799515683 - - -
19 Hb_007904_050 0.2850475582 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
20 Hb_000025_220 0.2852967877 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]

Gene co-expression network

sample Hb_001916_010 Hb_001916_010 Hb_004907_040 Hb_004907_040 Hb_001916_010--Hb_004907_040 Hb_122741_010 Hb_122741_010 Hb_001916_010--Hb_122741_010 Hb_000134_100 Hb_000134_100 Hb_001916_010--Hb_000134_100 Hb_002108_020 Hb_002108_020 Hb_001916_010--Hb_002108_020 Hb_012675_020 Hb_012675_020 Hb_001916_010--Hb_012675_020 Hb_009803_010 Hb_009803_010 Hb_001916_010--Hb_009803_010 Hb_004907_040--Hb_122741_010 Hb_004907_040--Hb_000134_100 Hb_004907_040--Hb_002108_020 Hb_012539_090 Hb_012539_090 Hb_004907_040--Hb_012539_090 Hb_004907_040--Hb_012675_020 Hb_122741_010--Hb_009803_010 Hb_122741_010--Hb_000134_100 Hb_010367_020 Hb_010367_020 Hb_122741_010--Hb_010367_020 Hb_158296_010 Hb_158296_010 Hb_122741_010--Hb_158296_010 Hb_000134_100--Hb_002108_020 Hb_000134_100--Hb_012675_020 Hb_002636_140 Hb_002636_140 Hb_000134_100--Hb_002636_140 Hb_002108_020--Hb_002636_140 Hb_002108_020--Hb_012675_020 Hb_022425_020 Hb_022425_020 Hb_002108_020--Hb_022425_020 Hb_012675_020--Hb_002636_140 Hb_002534_140 Hb_002534_140 Hb_012675_020--Hb_002534_140 Hb_012675_020--Hb_022425_020 Hb_001689_060 Hb_001689_060 Hb_012675_020--Hb_001689_060 Hb_000025_220 Hb_000025_220 Hb_009803_010--Hb_000025_220 Hb_005263_010 Hb_005263_010 Hb_009803_010--Hb_005263_010 Hb_005368_030 Hb_005368_030 Hb_009803_010--Hb_005368_030 Hb_009803_010--Hb_010367_020 Hb_182507_010 Hb_182507_010 Hb_009803_010--Hb_182507_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00899781 0.0270428 0 0.0106063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis