Hb_001916_060

Information

Type -
Description -
Location Contig1916: 64160-67837
Sequence    

Annotation

kegg
ID rcu:RCOM_0347240
description hypothetical protein
nr
ID XP_012081463.1
description PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
swissprot
ID Q9LKR4
description Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2
trembl
ID A0A067KDJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18493 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19110: 63918-67420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_060 0.0 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
2 Hb_101020_010 0.163234383 - - -
3 Hb_114984_010 0.1655880453 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001195_150 0.1749593945 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
5 Hb_128376_010 0.1785318152 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_005517_010 0.1829031795 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
7 Hb_001935_190 0.1913531384 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
8 Hb_009693_030 0.1929658063 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_006615_100 0.1976746309 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
10 Hb_080147_080 0.2017891066 - - peroxiredoxin, putative [Ricinus communis]
11 Hb_063409_020 0.2075174099 - - Calcium-binding protein, putative [Ricinus communis]
12 Hb_004570_050 0.2078669739 - - kinase, putative [Ricinus communis]
13 Hb_005155_020 0.2083717362 - - -
14 Hb_000258_320 0.2105620928 - - -
15 Hb_000886_060 0.2124743057 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
16 Hb_000281_010 0.2124794234 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
17 Hb_054436_010 0.2127995724 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
18 Hb_012184_050 0.2135740643 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
19 Hb_000116_460 0.2139362026 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
20 Hb_001703_130 0.2145283615 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]

Gene co-expression network

sample Hb_001916_060 Hb_001916_060 Hb_101020_010 Hb_101020_010 Hb_001916_060--Hb_101020_010 Hb_114984_010 Hb_114984_010 Hb_001916_060--Hb_114984_010 Hb_001195_150 Hb_001195_150 Hb_001916_060--Hb_001195_150 Hb_128376_010 Hb_128376_010 Hb_001916_060--Hb_128376_010 Hb_005517_010 Hb_005517_010 Hb_001916_060--Hb_005517_010 Hb_001935_190 Hb_001935_190 Hb_001916_060--Hb_001935_190 Hb_009693_030 Hb_009693_030 Hb_101020_010--Hb_009693_030 Hb_000160_150 Hb_000160_150 Hb_101020_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_101020_010--Hb_007136_020 Hb_003297_020 Hb_003297_020 Hb_101020_010--Hb_003297_020 Hb_124961_010 Hb_124961_010 Hb_101020_010--Hb_124961_010 Hb_004920_060 Hb_004920_060 Hb_114984_010--Hb_004920_060 Hb_001731_020 Hb_001731_020 Hb_114984_010--Hb_001731_020 Hb_000997_410 Hb_000997_410 Hb_114984_010--Hb_000997_410 Hb_001489_070 Hb_001489_070 Hb_114984_010--Hb_001489_070 Hb_000116_460 Hb_000116_460 Hb_114984_010--Hb_000116_460 Hb_000021_020 Hb_000021_020 Hb_114984_010--Hb_000021_020 Hb_006615_100 Hb_006615_100 Hb_001195_150--Hb_006615_100 Hb_001195_150--Hb_128376_010 Hb_001195_150--Hb_000116_460 Hb_008246_030 Hb_008246_030 Hb_001195_150--Hb_008246_030 Hb_000281_010 Hb_000281_010 Hb_001195_150--Hb_000281_010 Hb_007680_020 Hb_007680_020 Hb_001195_150--Hb_007680_020 Hb_000152_670 Hb_000152_670 Hb_128376_010--Hb_000152_670 Hb_004017_040 Hb_004017_040 Hb_128376_010--Hb_004017_040 Hb_001052_040 Hb_001052_040 Hb_128376_010--Hb_001052_040 Hb_000261_290 Hb_000261_290 Hb_128376_010--Hb_000261_290 Hb_002742_080 Hb_002742_080 Hb_128376_010--Hb_002742_080 Hb_010883_080 Hb_010883_080 Hb_128376_010--Hb_010883_080 Hb_012107_070 Hb_012107_070 Hb_005517_010--Hb_012107_070 Hb_036693_010 Hb_036693_010 Hb_005517_010--Hb_036693_010 Hb_005155_020 Hb_005155_020 Hb_005517_010--Hb_005155_020 Hb_061466_020 Hb_061466_020 Hb_005517_010--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_005517_010--Hb_000997_010 Hb_120662_010 Hb_120662_010 Hb_001935_190--Hb_120662_010 Hb_001916_120 Hb_001916_120 Hb_001935_190--Hb_001916_120 Hb_000329_420 Hb_000329_420 Hb_001935_190--Hb_000329_420 Hb_000792_110 Hb_000792_110 Hb_001935_190--Hb_000792_110 Hb_000252_090 Hb_000252_090 Hb_001935_190--Hb_000252_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26429 0.829748 0.596764 0.464969 1.20357 1.19657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.042608 0.0502888 0.0954934 0.0799899 0

CAGE analysis