Hb_001916_070

Information

Type -
Description -
Location Contig1916: 74709-80419
Sequence    

Annotation

kegg
ID tcc:TCM_002400
description Phytochrome C isoform 1
nr
ID XP_012081464.1
description PREDICTED: phytochrome C [Jatropha curcas]
swissprot
ID A2XM23
description Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=3 SV=2
trembl
ID A0A067KCF9
description Phytochrome OS=Jatropha curcas GN=JCGZ_18494 PE=3 SV=1
Gene Ontology
ID GO:0005622
description phytochrome c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19111: 74542-75801 , PASA_asmbl_19112: 75902-76215 , PASA_asmbl_19113: 76244-80063 , PASA_asmbl_19114: 77091-77396 , PASA_asmbl_19115: 80210-80572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_070 0.0 - - PREDICTED: phytochrome C [Jatropha curcas]
2 Hb_140627_020 0.0968373809 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
3 Hb_002316_160 0.1180071199 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
4 Hb_002235_200 0.1180086356 - - pattern formation protein, putative [Ricinus communis]
5 Hb_013358_010 0.1200225727 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
6 Hb_010180_060 0.1212832251 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
7 Hb_023344_160 0.1237157142 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
8 Hb_002780_010 0.1237742139 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
9 Hb_007820_010 0.1274914343 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
10 Hb_001865_070 0.1285013535 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
11 Hb_005977_070 0.130423933 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
12 Hb_002311_100 0.1304771359 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
13 Hb_000130_490 0.1314222031 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
14 Hb_002521_020 0.1319169566 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
15 Hb_000183_030 0.133620411 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
16 Hb_009898_010 0.1345570714 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
17 Hb_005486_030 0.1353809716 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
18 Hb_004019_120 0.1371512832 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
19 Hb_002817_060 0.1392041292 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
20 Hb_000215_140 0.1395078988 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]

Gene co-expression network

sample Hb_001916_070 Hb_001916_070 Hb_140627_020 Hb_140627_020 Hb_001916_070--Hb_140627_020 Hb_002316_160 Hb_002316_160 Hb_001916_070--Hb_002316_160 Hb_002235_200 Hb_002235_200 Hb_001916_070--Hb_002235_200 Hb_013358_010 Hb_013358_010 Hb_001916_070--Hb_013358_010 Hb_010180_060 Hb_010180_060 Hb_001916_070--Hb_010180_060 Hb_023344_160 Hb_023344_160 Hb_001916_070--Hb_023344_160 Hb_000556_220 Hb_000556_220 Hb_140627_020--Hb_000556_220 Hb_140627_020--Hb_002235_200 Hb_000720_130 Hb_000720_130 Hb_140627_020--Hb_000720_130 Hb_002311_100 Hb_002311_100 Hb_140627_020--Hb_002311_100 Hb_140627_020--Hb_013358_010 Hb_005656_040 Hb_005656_040 Hb_140627_020--Hb_005656_040 Hb_000130_490 Hb_000130_490 Hb_002316_160--Hb_000130_490 Hb_005486_030 Hb_005486_030 Hb_002316_160--Hb_005486_030 Hb_001999_090 Hb_001999_090 Hb_002316_160--Hb_001999_090 Hb_009898_010 Hb_009898_010 Hb_002316_160--Hb_009898_010 Hb_006718_020 Hb_006718_020 Hb_002316_160--Hb_006718_020 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070 Hb_004374_110 Hb_004374_110 Hb_002235_200--Hb_004374_110 Hb_003607_070 Hb_003607_070 Hb_002235_200--Hb_003607_070 Hb_006839_010 Hb_006839_010 Hb_002235_200--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002235_200--Hb_000123_180 Hb_003125_170 Hb_003125_170 Hb_002235_200--Hb_003125_170 Hb_004410_120 Hb_004410_120 Hb_013358_010--Hb_004410_120 Hb_143766_060 Hb_143766_060 Hb_013358_010--Hb_143766_060 Hb_000260_070 Hb_000260_070 Hb_013358_010--Hb_000260_070 Hb_001628_070 Hb_001628_070 Hb_013358_010--Hb_001628_070 Hb_000174_290 Hb_000174_290 Hb_013358_010--Hb_000174_290 Hb_001217_050 Hb_001217_050 Hb_013358_010--Hb_001217_050 Hb_002521_020 Hb_002521_020 Hb_010180_060--Hb_002521_020 Hb_008053_040 Hb_008053_040 Hb_010180_060--Hb_008053_040 Hb_010180_060--Hb_006839_010 Hb_005488_170 Hb_005488_170 Hb_010180_060--Hb_005488_170 Hb_000059_230 Hb_000059_230 Hb_010180_060--Hb_000059_230 Hb_003805_040 Hb_003805_040 Hb_010180_060--Hb_003805_040 Hb_005977_070 Hb_005977_070 Hb_023344_160--Hb_005977_070 Hb_002631_210 Hb_002631_210 Hb_023344_160--Hb_002631_210 Hb_004204_010 Hb_004204_010 Hb_023344_160--Hb_004204_010 Hb_001723_100 Hb_001723_100 Hb_023344_160--Hb_001723_100 Hb_001691_200 Hb_001691_200 Hb_023344_160--Hb_001691_200 Hb_171554_040 Hb_171554_040 Hb_023344_160--Hb_171554_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.65184 12.5533 2.88235 8.47041 5.95419 6.23867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.97528 1.69695 13.5762 8.29661 12.9972

CAGE analysis