Hb_001916_100

Information

Type -
Description -
Location Contig1916: 98320-103817
Sequence    

Annotation

kegg
ID tcc:TCM_002398
description Tetratricopeptide repeat-like superfamily protein
nr
ID XP_012081470.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Jatropha curcas]
swissprot
ID Q9FIB2
description Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
trembl
ID A0A061DL19
description Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_002398 PE=4 SV=1
Gene Ontology
ID GO:0003677
description pentatricopeptide repeat-containing protein at5g09950

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19118: 98935-100432 , PASA_asmbl_19120: 101190-101363 , PASA_asmbl_19121: 101949-102160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_100 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Jatropha curcas]
2 Hb_003900_030 0.1094481763 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
3 Hb_000358_140 0.1157222187 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010812_050 0.126583836 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
5 Hb_002027_090 0.1303902175 - - -
6 Hb_005883_020 0.1318600615 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
7 Hb_002233_130 0.1321683616 - - transporter, putative [Ricinus communis]
8 Hb_003292_050 0.1325424401 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
9 Hb_008206_060 0.1326429282 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_048141_030 0.1341406251 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
11 Hb_000856_420 0.1352296087 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_005523_020 0.135599904 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
13 Hb_000849_020 0.1358604135 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
14 Hb_002328_040 0.1397780231 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
15 Hb_003638_010 0.1411453698 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
16 Hb_003225_020 0.1415446779 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
17 Hb_001213_130 0.1423014844 - - PREDICTED: fructokinase-like 1, chloroplastic [Jatropha curcas]
18 Hb_001662_140 0.1423415478 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
19 Hb_001492_030 0.1442363648 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Jatropha curcas]
20 Hb_000245_150 0.1447204348 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_001916_100 Hb_001916_100 Hb_003900_030 Hb_003900_030 Hb_001916_100--Hb_003900_030 Hb_000358_140 Hb_000358_140 Hb_001916_100--Hb_000358_140 Hb_010812_050 Hb_010812_050 Hb_001916_100--Hb_010812_050 Hb_002027_090 Hb_002027_090 Hb_001916_100--Hb_002027_090 Hb_005883_020 Hb_005883_020 Hb_001916_100--Hb_005883_020 Hb_002233_130 Hb_002233_130 Hb_001916_100--Hb_002233_130 Hb_003900_030--Hb_005883_020 Hb_003900_030--Hb_002233_130 Hb_004254_100 Hb_004254_100 Hb_003900_030--Hb_004254_100 Hb_007035_040 Hb_007035_040 Hb_003900_030--Hb_007035_040 Hb_000363_060 Hb_000363_060 Hb_003900_030--Hb_000363_060 Hb_000358_140--Hb_002027_090 Hb_000358_140--Hb_005883_020 Hb_000358_140--Hb_010812_050 Hb_006816_180 Hb_006816_180 Hb_000358_140--Hb_006816_180 Hb_041327_020 Hb_041327_020 Hb_000358_140--Hb_041327_020 Hb_000358_140--Hb_002233_130 Hb_000856_420 Hb_000856_420 Hb_010812_050--Hb_000856_420 Hb_025557_050 Hb_025557_050 Hb_010812_050--Hb_025557_050 Hb_007479_070 Hb_007479_070 Hb_010812_050--Hb_007479_070 Hb_000849_020 Hb_000849_020 Hb_010812_050--Hb_000849_020 Hb_001789_190 Hb_001789_190 Hb_010812_050--Hb_001789_190 Hb_010812_050--Hb_002027_090 Hb_005496_050 Hb_005496_050 Hb_002027_090--Hb_005496_050 Hb_002027_090--Hb_041327_020 Hb_002027_090--Hb_006816_180 Hb_000627_250 Hb_000627_250 Hb_002027_090--Hb_000627_250 Hb_001828_120 Hb_001828_120 Hb_005883_020--Hb_001828_120 Hb_007192_090 Hb_007192_090 Hb_005883_020--Hb_007192_090 Hb_005883_020--Hb_004254_100 Hb_005883_020--Hb_002233_130 Hb_001244_150 Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.7983 3.44356 4.48581 0.858368 3.86888 3.77708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.879031 1.34711 1.83408 0.955622 5.30083

CAGE analysis