Hb_001916_120

Information

Type -
Description -
Location Contig1916: 105385-112410
Sequence    

Annotation

kegg
ID rcu:RCOM_0346860
description snf1-kinase beta subunit, plants, putative
nr
ID XP_002530210.1
description snf1-kinase beta subunit, plants, putative [Ricinus communis]
swissprot
ID Q9SCY5
description SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
trembl
ID B9SW41
description Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_0346860 PE=4 SV=1
Gene Ontology
ID GO:0016301
description snf1-related protein kinase regulatory subunit beta-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19125: 112558-112768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_120 0.0 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
2 Hb_001138_010 0.1246850241 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000252_090 0.1481868961 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
4 Hb_001277_410 0.154871229 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
5 Hb_000365_260 0.1603093711 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004324_240 0.1603171242 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
7 Hb_018954_020 0.1615967891 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
8 Hb_000329_420 0.1654167541 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
9 Hb_002159_030 0.1681986463 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
10 Hb_001268_210 0.173372821 - - zinc finger protein, putative [Ricinus communis]
11 Hb_002159_040 0.1764360377 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
12 Hb_001677_050 0.1788923597 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
13 Hb_005460_030 0.1802608073 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
14 Hb_000258_020 0.1808671937 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
15 Hb_128496_010 0.1831110013 - - unnamed protein product [Vitis vinifera]
16 Hb_011953_030 0.1843777794 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
17 Hb_001040_120 0.1854972484 - - allantoinase, putative [Ricinus communis]
18 Hb_000116_460 0.1862007199 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
19 Hb_004143_070 0.1870634965 - - cytochrome P450, putative [Ricinus communis]
20 Hb_004920_060 0.1873460817 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001916_120 Hb_001916_120 Hb_001138_010 Hb_001138_010 Hb_001916_120--Hb_001138_010 Hb_000252_090 Hb_000252_090 Hb_001916_120--Hb_000252_090 Hb_001277_410 Hb_001277_410 Hb_001916_120--Hb_001277_410 Hb_000365_260 Hb_000365_260 Hb_001916_120--Hb_000365_260 Hb_004324_240 Hb_004324_240 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_001138_010--Hb_000252_090 Hb_000605_010 Hb_000605_010 Hb_001138_010--Hb_000605_010 Hb_001677_050 Hb_001677_050 Hb_001138_010--Hb_001677_050 Hb_000156_030 Hb_000156_030 Hb_001138_010--Hb_000156_030 Hb_003540_140 Hb_003540_140 Hb_001138_010--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_000252_090--Hb_000329_540 Hb_000329_420 Hb_000329_420 Hb_000252_090--Hb_000329_420 Hb_000252_090--Hb_000156_030 Hb_000441_230 Hb_000441_230 Hb_000252_090--Hb_000441_230 Hb_001277_410--Hb_001138_010 Hb_001277_410--Hb_000252_090 Hb_000258_020 Hb_000258_020 Hb_001277_410--Hb_000258_020 Hb_101020_010 Hb_101020_010 Hb_001277_410--Hb_101020_010 Hb_020549_010 Hb_020549_010 Hb_001277_410--Hb_020549_010 Hb_162286_020 Hb_162286_020 Hb_000365_260--Hb_162286_020 Hb_000179_200 Hb_000179_200 Hb_000365_260--Hb_000179_200 Hb_001268_210 Hb_001268_210 Hb_000365_260--Hb_001268_210 Hb_002027_220 Hb_002027_220 Hb_000365_260--Hb_002027_220 Hb_000465_120 Hb_000465_120 Hb_000365_260--Hb_000465_120 Hb_005460_030 Hb_005460_030 Hb_004324_240--Hb_005460_030 Hb_004324_240--Hb_018954_020 Hb_002159_030 Hb_002159_030 Hb_004324_240--Hb_002159_030 Hb_000016_030 Hb_000016_030 Hb_004324_240--Hb_000016_030 Hb_000215_260 Hb_000215_260 Hb_004324_240--Hb_000215_260 Hb_000497_230 Hb_000497_230 Hb_018954_020--Hb_000497_230 Hb_002159_040 Hb_002159_040 Hb_018954_020--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_018954_020--Hb_008406_140 Hb_000566_100 Hb_000566_100 Hb_018954_020--Hb_000566_100 Hb_000197_210 Hb_000197_210 Hb_018954_020--Hb_000197_210 Hb_002235_130 Hb_002235_130 Hb_018954_020--Hb_002235_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.3349 8.69286 6.87486 15.6898 27.1276 41.2781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20433 1.94091 3.33291 2.13812 7.84875

CAGE analysis