Hb_001916_130

Information

Type -
Description -
Location Contig1916: 124507-126707
Sequence    

Annotation

kegg
ID tcc:TCM_002409
description hypothetical protein
nr
ID XP_007049365.1
description Uncharacterized protein TCM_002409 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DM67
description Uncharacterized protein OS=Theobroma cacao GN=TCM_002409 PE=4 SV=1
Gene Ontology
ID GO:0005622
description myelin transcription factor 1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19127: 125072-126759
cDNA
(Sanger)
(ID:Location)		 005_F03.ab1: 125072-126490 , 012_O21.ab1: 125268-125842

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_130 0.0 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
2 Hb_000376_110 0.1423300024 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
3 Hb_000641_030 0.1525522173 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
4 Hb_002078_040 0.1533304926 - - protein with unknown function [Ricinus communis]
5 Hb_000056_120 0.1613079235 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
6 Hb_003304_080 0.1644251044 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
7 Hb_007810_040 0.1644685043 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
8 Hb_000300_540 0.1669130772 - - PREDICTED: syntaxin-132 [Jatropha curcas]
9 Hb_012977_010 0.1681265078 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
10 Hb_000050_120 0.1713544381 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
11 Hb_000416_100 0.173779194 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
12 Hb_026247_030 0.1741178585 - - PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
13 Hb_002450_050 0.1774004137 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
14 Hb_001825_010 0.1795872486 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
15 Hb_007786_010 0.1815787031 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
16 Hb_000376_150 0.1819631098 - - O-acyltransferase WSD1 [Gossypium arboreum]
17 Hb_000347_080 0.1833984125 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
18 Hb_002388_060 0.1884134841 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000365_350 0.1895474516 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
20 Hb_000062_230 0.1896265373 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001916_130 Hb_001916_130 Hb_000376_110 Hb_000376_110 Hb_001916_130--Hb_000376_110 Hb_000641_030 Hb_000641_030 Hb_001916_130--Hb_000641_030 Hb_002078_040 Hb_002078_040 Hb_001916_130--Hb_002078_040 Hb_000056_120 Hb_000056_120 Hb_001916_130--Hb_000056_120 Hb_003304_080 Hb_003304_080 Hb_001916_130--Hb_003304_080 Hb_007810_040 Hb_007810_040 Hb_001916_130--Hb_007810_040 Hb_000920_140 Hb_000920_140 Hb_000376_110--Hb_000920_140 Hb_023988_020 Hb_023988_020 Hb_000376_110--Hb_023988_020 Hb_004032_440 Hb_004032_440 Hb_000376_110--Hb_004032_440 Hb_001696_030 Hb_001696_030 Hb_000376_110--Hb_001696_030 Hb_000376_110--Hb_000641_030 Hb_000376_110--Hb_007810_040 Hb_003304_050 Hb_003304_050 Hb_000641_030--Hb_003304_050 Hb_000376_150 Hb_000376_150 Hb_000641_030--Hb_000376_150 Hb_003687_200 Hb_003687_200 Hb_000641_030--Hb_003687_200 Hb_000641_030--Hb_000920_140 Hb_000416_100 Hb_000416_100 Hb_000641_030--Hb_000416_100 Hb_000050_120 Hb_000050_120 Hb_002078_040--Hb_000050_120 Hb_002078_040--Hb_003304_080 Hb_002078_040--Hb_007810_040 Hb_012654_020 Hb_012654_020 Hb_002078_040--Hb_012654_020 Hb_002172_030 Hb_002172_030 Hb_002078_040--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_002078_040--Hb_154381_050 Hb_000365_350 Hb_000365_350 Hb_000056_120--Hb_000365_350 Hb_000565_020 Hb_000565_020 Hb_000056_120--Hb_000565_020 Hb_000156_030 Hb_000156_030 Hb_000056_120--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_000056_120--Hb_061256_030 Hb_001825_010 Hb_001825_010 Hb_000056_120--Hb_001825_010 Hb_000566_140 Hb_000566_140 Hb_000056_120--Hb_000566_140 Hb_003304_080--Hb_007810_040 Hb_003304_080--Hb_000050_120 Hb_095397_010 Hb_095397_010 Hb_003304_080--Hb_095397_010 Hb_043637_010 Hb_043637_010 Hb_003304_080--Hb_043637_010 Hb_003304_080--Hb_012654_020 Hb_007178_010 Hb_007178_010 Hb_007810_040--Hb_007178_010 Hb_002232_180 Hb_002232_180 Hb_007810_040--Hb_002232_180 Hb_007810_040--Hb_095397_010 Hb_007810_040--Hb_043637_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.4631 2.09556 5.22719 28.6183 75.9544 43.8815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6499 21.1224 26.6624 2.81859 2.1783

CAGE analysis