Hb_001916_150

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig1916: 154694-155305
Sequence    

Annotation

kegg
ID vvi:100251431
description nuclear transcription factor Y subunit B-3
nr
ID XP_003634760.1
description PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
swissprot
ID O23310
description Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1
trembl
ID D7UAG5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00440 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear transcription factor y subunit b-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19128: 154509-155552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_150 0.0 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
2 Hb_003783_050 0.1031006478 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003778_020 0.1112600216 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_000300_680 0.1149545256 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
5 Hb_003226_250 0.1213814453 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
6 Hb_030312_030 0.1215082761 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
7 Hb_114917_010 0.1215146271 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
8 Hb_031330_020 0.1240282196 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_000997_320 0.126689615 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
10 Hb_000805_010 0.1365361039 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
11 Hb_020378_020 0.1378197006 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_000054_030 0.1383856583 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
13 Hb_000834_080 0.1386136684 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
14 Hb_001195_370 0.1401755335 - - -
15 Hb_001054_060 0.1421527643 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
16 Hb_002759_220 0.1430574061 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
17 Hb_000768_150 0.1482804217 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
18 Hb_000941_120 0.1485417758 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
19 Hb_001195_380 0.1487128739 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
20 Hb_000417_380 0.1491840333 - - SecY protein transport family protein [Theobroma cacao]

Gene co-expression network

sample Hb_001916_150 Hb_001916_150 Hb_003783_050 Hb_003783_050 Hb_001916_150--Hb_003783_050 Hb_003778_020 Hb_003778_020 Hb_001916_150--Hb_003778_020 Hb_000300_680 Hb_000300_680 Hb_001916_150--Hb_000300_680 Hb_003226_250 Hb_003226_250 Hb_001916_150--Hb_003226_250 Hb_030312_030 Hb_030312_030 Hb_001916_150--Hb_030312_030 Hb_114917_010 Hb_114917_010 Hb_001916_150--Hb_114917_010 Hb_000941_120 Hb_000941_120 Hb_003783_050--Hb_000941_120 Hb_036388_010 Hb_036388_010 Hb_003783_050--Hb_036388_010 Hb_003783_050--Hb_030312_030 Hb_035834_010 Hb_035834_010 Hb_003783_050--Hb_035834_010 Hb_000445_370 Hb_000445_370 Hb_003783_050--Hb_000445_370 Hb_000008_060 Hb_000008_060 Hb_003778_020--Hb_000008_060 Hb_003778_020--Hb_003783_050 Hb_000130_200 Hb_000130_200 Hb_003778_020--Hb_000130_200 Hb_031330_020 Hb_031330_020 Hb_003778_020--Hb_031330_020 Hb_000622_060 Hb_000622_060 Hb_003778_020--Hb_000622_060 Hb_000616_030 Hb_000616_030 Hb_000300_680--Hb_000616_030 Hb_000300_680--Hb_031330_020 Hb_000329_080 Hb_000329_080 Hb_000300_680--Hb_000329_080 Hb_000163_110 Hb_000163_110 Hb_000300_680--Hb_000163_110 Hb_000975_050 Hb_000975_050 Hb_000300_680--Hb_000975_050 Hb_001369_010 Hb_001369_010 Hb_003226_250--Hb_001369_010 Hb_000808_150 Hb_000808_150 Hb_003226_250--Hb_000808_150 Hb_011310_040 Hb_011310_040 Hb_003226_250--Hb_011310_040 Hb_002759_220 Hb_002759_220 Hb_003226_250--Hb_002759_220 Hb_002596_080 Hb_002596_080 Hb_003226_250--Hb_002596_080 Hb_003462_040 Hb_003462_040 Hb_003226_250--Hb_003462_040 Hb_001195_370 Hb_001195_370 Hb_030312_030--Hb_001195_370 Hb_001054_060 Hb_001054_060 Hb_030312_030--Hb_001054_060 Hb_030312_030--Hb_000941_120 Hb_003006_080 Hb_003006_080 Hb_030312_030--Hb_003006_080 Hb_002805_090 Hb_002805_090 Hb_030312_030--Hb_002805_090 Hb_002613_040 Hb_002613_040 Hb_114917_010--Hb_002613_040 Hb_003097_220 Hb_003097_220 Hb_114917_010--Hb_003097_220 Hb_003058_170 Hb_003058_170 Hb_114917_010--Hb_003058_170 Hb_020378_020 Hb_020378_020 Hb_114917_010--Hb_020378_020 Hb_028396_020 Hb_028396_020 Hb_114917_010--Hb_028396_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00071 11.1018 16.4132 38.9348 1.21641 2.60203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.70676 4.23873 4.73123 12.1855 60.7421

CAGE analysis