Hb_001922_120

Information

Type -
Description -
Location Contig1922: 112189-115034
Sequence    

Annotation

kegg
ID cic:CICLE_v10020944mg
description hypothetical protein
nr
ID KJB24284.1
description hypothetical protein B456_004G136900 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QX79
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G136900 PE=4 SV=1
Gene Ontology
ID GO:0016020
description caax amino terminal protease family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19165: 112705-114485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_120 0.0 - - hypothetical protein B456_004G136900 [Gossypium raimondii]
2 Hb_000185_040 0.1157400931 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
3 Hb_003488_030 0.1191092308 - - PREDICTED: protein CPR-5 [Jatropha curcas]
4 Hb_001635_060 0.1250831159 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
5 Hb_001226_030 0.1277951136 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
6 Hb_015175_020 0.1330576931 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
7 Hb_007163_090 0.133378306 - - PREDICTED: protein spt2-like [Jatropha curcas]
8 Hb_011485_070 0.1340760044 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
9 Hb_001085_060 0.1345338256 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
10 Hb_002675_070 0.1348054209 - - PREDICTED: protein CASC3 [Jatropha curcas]
11 Hb_002311_040 0.1357580553 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
12 Hb_000244_160 0.1362767979 - - PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
13 Hb_000608_240 0.1376388889 - - eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein [Populus trichocarpa]
14 Hb_069738_010 0.137778957 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
15 Hb_004452_010 0.1380528823 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
16 Hb_001341_170 0.1381879997 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
17 Hb_000832_020 0.1388539624 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
18 Hb_004724_150 0.1389596474 - - expressed protein, putative [Ricinus communis]
19 Hb_004117_310 0.1392908664 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
20 Hb_002678_020 0.1393449856 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]

Gene co-expression network

sample Hb_001922_120 Hb_001922_120 Hb_000185_040 Hb_000185_040 Hb_001922_120--Hb_000185_040 Hb_003488_030 Hb_003488_030 Hb_001922_120--Hb_003488_030 Hb_001635_060 Hb_001635_060 Hb_001922_120--Hb_001635_060 Hb_001226_030 Hb_001226_030 Hb_001922_120--Hb_001226_030 Hb_015175_020 Hb_015175_020 Hb_001922_120--Hb_015175_020 Hb_007163_090 Hb_007163_090 Hb_001922_120--Hb_007163_090 Hb_011485_070 Hb_011485_070 Hb_000185_040--Hb_011485_070 Hb_002740_180 Hb_002740_180 Hb_000185_040--Hb_002740_180 Hb_001377_490 Hb_001377_490 Hb_000185_040--Hb_001377_490 Hb_000318_290 Hb_000318_290 Hb_000185_040--Hb_000318_290 Hb_001341_170 Hb_001341_170 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_000574_070 Hb_000574_070 Hb_003488_030--Hb_000574_070 Hb_000127_040 Hb_000127_040 Hb_003488_030--Hb_000127_040 Hb_000166_130 Hb_000166_130 Hb_003488_030--Hb_000166_130 Hb_003029_110 Hb_003029_110 Hb_003488_030--Hb_003029_110 Hb_000201_110 Hb_000201_110 Hb_003488_030--Hb_000201_110 Hb_003966_030 Hb_003966_030 Hb_003488_030--Hb_003966_030 Hb_001898_220 Hb_001898_220 Hb_001635_060--Hb_001898_220 Hb_001635_060--Hb_011485_070 Hb_001635_060--Hb_000185_040 Hb_000656_110 Hb_000656_110 Hb_001635_060--Hb_000656_110 Hb_004218_110 Hb_004218_110 Hb_001635_060--Hb_004218_110 Hb_007441_230 Hb_007441_230 Hb_001635_060--Hb_007441_230 Hb_001226_030--Hb_007163_090 Hb_123352_020 Hb_123352_020 Hb_001226_030--Hb_123352_020 Hb_000768_040 Hb_000768_040 Hb_001226_030--Hb_000768_040 Hb_000577_010 Hb_000577_010 Hb_001226_030--Hb_000577_010 Hb_000487_290 Hb_000487_290 Hb_001226_030--Hb_000487_290 Hb_004724_060 Hb_004724_060 Hb_001226_030--Hb_004724_060 Hb_003294_090 Hb_003294_090 Hb_015175_020--Hb_003294_090 Hb_000999_050 Hb_000999_050 Hb_015175_020--Hb_000999_050 Hb_000028_480 Hb_000028_480 Hb_015175_020--Hb_000028_480 Hb_004724_150 Hb_004724_150 Hb_015175_020--Hb_004724_150 Hb_004607_050 Hb_004607_050 Hb_015175_020--Hb_004607_050 Hb_000832_020 Hb_000832_020 Hb_015175_020--Hb_000832_020 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_007163_090--Hb_000577_010 Hb_007163_090--Hb_123352_020 Hb_001797_050 Hb_001797_050 Hb_007163_090--Hb_001797_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0550745 0.15715 0.0840554 0.10029 0.160418 0.349649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126575 0.149298 0.271233 0.180996 0.100369

CAGE analysis