Hb_001922_130

Information

Type -
Description -
Location Contig1922: 116974-125458
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G294300g
description hypothetical protein
nr
ID XP_007160122.1
description hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7CT84
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G294300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_130 0.0 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
2 Hb_001473_080 0.0818682059 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
3 Hb_000120_570 0.0956493749 - - Mlo protein [Hevea brasiliensis]
4 Hb_010883_080 0.0975169988 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
5 Hb_004374_150 0.1045575143 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
6 Hb_000116_570 0.1059556322 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
7 Hb_000186_260 0.1073670111 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
8 Hb_009178_020 0.1101077916 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
9 Hb_000504_170 0.118868824 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
10 Hb_000016_280 0.1192593184 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
11 Hb_001474_030 0.1227680383 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
12 Hb_001473_190 0.1237245539 - - 50S ribosomal protein L20 [Hevea brasiliensis]
13 Hb_004899_030 0.1238314634 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
14 Hb_000685_080 0.1268291451 - - protein binding protein, putative [Ricinus communis]
15 Hb_003125_060 0.1276186336 - - PREDICTED: snurportin-1 [Jatropha curcas]
16 Hb_000504_160 0.1286271367 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
17 Hb_006631_010 0.1292214739 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
18 Hb_001227_110 0.1296665429 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
19 Hb_000093_130 0.1306876725 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
20 Hb_023020_060 0.1317815713 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]

Gene co-expression network

sample Hb_001922_130 Hb_001922_130 Hb_001473_080 Hb_001473_080 Hb_001922_130--Hb_001473_080 Hb_000120_570 Hb_000120_570 Hb_001922_130--Hb_000120_570 Hb_010883_080 Hb_010883_080 Hb_001922_130--Hb_010883_080 Hb_004374_150 Hb_004374_150 Hb_001922_130--Hb_004374_150 Hb_000116_570 Hb_000116_570 Hb_001922_130--Hb_000116_570 Hb_000186_260 Hb_000186_260 Hb_001922_130--Hb_000186_260 Hb_001946_240 Hb_001946_240 Hb_001473_080--Hb_001946_240 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_001473_080--Hb_000120_570 Hb_001473_080--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_001473_080--Hb_002675_040 Hb_001534_070 Hb_001534_070 Hb_000120_570--Hb_001534_070 Hb_009178_020 Hb_009178_020 Hb_000120_570--Hb_009178_020 Hb_000685_080 Hb_000685_080 Hb_000120_570--Hb_000685_080 Hb_000120_570--Hb_004374_150 Hb_010883_080--Hb_000116_570 Hb_000016_280 Hb_000016_280 Hb_010883_080--Hb_000016_280 Hb_010883_080--Hb_000685_080 Hb_010883_080--Hb_000186_260 Hb_004701_030 Hb_004701_030 Hb_004374_150--Hb_004701_030 Hb_073171_080 Hb_073171_080 Hb_004374_150--Hb_073171_080 Hb_023020_060 Hb_023020_060 Hb_004374_150--Hb_023020_060 Hb_001396_290 Hb_001396_290 Hb_004374_150--Hb_001396_290 Hb_023001_020 Hb_023001_020 Hb_004374_150--Hb_023001_020 Hb_001474_030 Hb_001474_030 Hb_004374_150--Hb_001474_030 Hb_000116_570--Hb_000016_280 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_000504_160 Hb_000504_160 Hb_000186_260--Hb_000504_160 Hb_002659_060 Hb_002659_060 Hb_000186_260--Hb_002659_060 Hb_000331_160 Hb_000331_160 Hb_000186_260--Hb_000331_160 Hb_000186_260--Hb_001473_080 Hb_000186_260--Hb_001396_290 Hb_004017_040 Hb_004017_040 Hb_000186_260--Hb_004017_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05588 0.581683 0.374539 0.113922 1.49624 0.781755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.410454 0.27667 0.0841753 0.241807 0.0934868

CAGE analysis