Hb_001922_160

Information

Type -
Description -
Location Contig1922: 134553-137441
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05890g
description hypothetical protein
nr
ID XP_012090719.1
description PREDICTED: receptor-like protein 12 [Jatropha curcas]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A067JRP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26025 PE=4 SV=1
Gene Ontology
ID GO:0003824
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_160 0.0 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
2 Hb_001514_040 0.1103815278 - - l-asparaginase, putative [Ricinus communis]
3 Hb_002760_060 0.1768619195 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
4 Hb_003893_020 0.1859761854 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
5 Hb_003442_050 0.1896801195 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
6 Hb_013057_030 0.1946550468 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001277_150 0.1986582733 - - hypothetical protein VITISV_043492 [Vitis vinifera]
8 Hb_015978_030 0.1989039938 - - Zinc finger protein GIS2 [Medicago truncatula]
9 Hb_003053_060 0.2012780527 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
10 Hb_001277_140 0.2012874732 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
11 Hb_005940_040 0.2022841191 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
12 Hb_002701_140 0.2032073733 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
13 Hb_059580_010 0.2073769577 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
14 Hb_000336_160 0.2084721524 - - ATP binding protein, putative [Ricinus communis]
15 Hb_172864_010 0.2085881806 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
16 Hb_004352_020 0.2108933405 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_000215_120 0.2134935114 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
18 Hb_008453_070 0.2142783463 - - putative aquaporin [Vitis vinifera]
19 Hb_138575_010 0.2147482162 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_174829_040 0.2149429753 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]

Gene co-expression network

sample Hb_001922_160 Hb_001922_160 Hb_001514_040 Hb_001514_040 Hb_001922_160--Hb_001514_040 Hb_002760_060 Hb_002760_060 Hb_001922_160--Hb_002760_060 Hb_003893_020 Hb_003893_020 Hb_001922_160--Hb_003893_020 Hb_003442_050 Hb_003442_050 Hb_001922_160--Hb_003442_050 Hb_013057_030 Hb_013057_030 Hb_001922_160--Hb_013057_030 Hb_001277_150 Hb_001277_150 Hb_001922_160--Hb_001277_150 Hb_001514_040--Hb_002760_060 Hb_001514_040--Hb_003442_050 Hb_001514_040--Hb_013057_030 Hb_048653_040 Hb_048653_040 Hb_001514_040--Hb_048653_040 Hb_033153_010 Hb_033153_010 Hb_001514_040--Hb_033153_010 Hb_002760_060--Hb_033153_010 Hb_000414_100 Hb_000414_100 Hb_002760_060--Hb_000414_100 Hb_174829_040 Hb_174829_040 Hb_002760_060--Hb_174829_040 Hb_002760_060--Hb_001277_150 Hb_011671_290 Hb_011671_290 Hb_002760_060--Hb_011671_290 Hb_116635_010 Hb_116635_010 Hb_003893_020--Hb_116635_010 Hb_107495_050 Hb_107495_050 Hb_003893_020--Hb_107495_050 Hb_002701_140 Hb_002701_140 Hb_003893_020--Hb_002701_140 Hb_005588_140 Hb_005588_140 Hb_003893_020--Hb_005588_140 Hb_127819_010 Hb_127819_010 Hb_003893_020--Hb_127819_010 Hb_003442_050--Hb_002760_060 Hb_000039_100 Hb_000039_100 Hb_003442_050--Hb_000039_100 Hb_000172_300 Hb_000172_300 Hb_003442_050--Hb_000172_300 Hb_005081_060 Hb_005081_060 Hb_003442_050--Hb_005081_060 Hb_003442_050--Hb_048653_040 Hb_002217_440 Hb_002217_440 Hb_013057_030--Hb_002217_440 Hb_013057_030--Hb_048653_040 Hb_048653_020 Hb_048653_020 Hb_013057_030--Hb_048653_020 Hb_013057_030--Hb_000172_300 Hb_116349_050 Hb_116349_050 Hb_013057_030--Hb_116349_050 Hb_003086_050 Hb_003086_050 Hb_013057_030--Hb_003086_050 Hb_059580_010 Hb_059580_010 Hb_001277_150--Hb_059580_010 Hb_001277_150--Hb_033153_010 Hb_000215_120 Hb_000215_120 Hb_001277_150--Hb_000215_120 Hb_001985_010 Hb_001985_010 Hb_001277_150--Hb_001985_010 Hb_005648_030 Hb_005648_030 Hb_001277_150--Hb_005648_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.382945 17.9304 0.0553137 0.658641 0.670501 0.660437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241843 0.154628 0.204643 0.882403 0

CAGE analysis