Hb_001922_170

Information

Type -
Description -
Location Contig1922: 144622-153608
Sequence    

Annotation

kegg
ID rcu:RCOM_1581420
description pyruvate kinase, putative (EC:2.7.1.40)
nr
ID XP_007038893.1
description Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
swissprot
ID Q9FLW9
description Plastidial pyruvate kinase 2 OS=Arabidopsis thaliana GN=PKP2 PE=1 SV=1
trembl
ID A0A061G8L1
description Pyruvate kinase OS=Theobroma cacao GN=TCM_015300 PE=3 SV=1
Gene Ontology
ID GO:0000287
description plastidial pyruvate kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19169: 145688-147114 , PASA_asmbl_19170: 152721-153279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_170 0.0 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
2 Hb_054865_120 0.0735702063 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
3 Hb_006570_140 0.0756131398 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
4 Hb_005847_060 0.0788237576 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
5 Hb_001579_270 0.0829063316 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
6 Hb_002820_050 0.0855405652 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
7 Hb_000094_330 0.0871666213 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
8 Hb_000035_500 0.0889989301 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]
9 Hb_002728_070 0.0909961287 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
10 Hb_000245_220 0.0910592189 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
11 Hb_008748_040 0.0921452449 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
12 Hb_000212_330 0.0923813873 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000329_140 0.0953338747 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
14 Hb_012395_230 0.0969279292 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
15 Hb_000025_470 0.0991206236 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
16 Hb_000959_030 0.0995898298 - - mitochondrial carrier protein, putative [Ricinus communis]
17 Hb_003050_270 0.0998004303 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
18 Hb_000053_110 0.1003277424 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000110_310 0.1007267215 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
20 Hb_029879_010 0.1008180185 - - ribosomal pseudouridine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001922_170 Hb_001922_170 Hb_054865_120 Hb_054865_120 Hb_001922_170--Hb_054865_120 Hb_006570_140 Hb_006570_140 Hb_001922_170--Hb_006570_140 Hb_005847_060 Hb_005847_060 Hb_001922_170--Hb_005847_060 Hb_001579_270 Hb_001579_270 Hb_001922_170--Hb_001579_270 Hb_002820_050 Hb_002820_050 Hb_001922_170--Hb_002820_050 Hb_000094_330 Hb_000094_330 Hb_001922_170--Hb_000094_330 Hb_000025_470 Hb_000025_470 Hb_054865_120--Hb_000025_470 Hb_002728_070 Hb_002728_070 Hb_054865_120--Hb_002728_070 Hb_003688_130 Hb_003688_130 Hb_054865_120--Hb_003688_130 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_008748_040 Hb_008748_040 Hb_054865_120--Hb_008748_040 Hb_000035_500 Hb_000035_500 Hb_006570_140--Hb_000035_500 Hb_006570_140--Hb_000094_330 Hb_006570_140--Hb_005847_060 Hb_001662_150 Hb_001662_150 Hb_006570_140--Hb_001662_150 Hb_000731_160 Hb_000731_160 Hb_006570_140--Hb_000731_160 Hb_011716_130 Hb_011716_130 Hb_005847_060--Hb_011716_130 Hb_005847_060--Hb_001662_150 Hb_002811_130 Hb_002811_130 Hb_005847_060--Hb_002811_130 Hb_001157_020 Hb_001157_020 Hb_005847_060--Hb_001157_020 Hb_005847_060--Hb_001579_270 Hb_007672_060 Hb_007672_060 Hb_001579_270--Hb_007672_060 Hb_000599_300 Hb_000599_300 Hb_001579_270--Hb_000599_300 Hb_000054_090 Hb_000054_090 Hb_001579_270--Hb_000054_090 Hb_001579_270--Hb_054865_120 Hb_033594_120 Hb_033594_120 Hb_001579_270--Hb_033594_120 Hb_003633_030 Hb_003633_030 Hb_001579_270--Hb_003633_030 Hb_004453_130 Hb_004453_130 Hb_002820_050--Hb_004453_130 Hb_005730_120 Hb_005730_120 Hb_002820_050--Hb_005730_120 Hb_022132_050 Hb_022132_050 Hb_002820_050--Hb_022132_050 Hb_007885_060 Hb_007885_060 Hb_002820_050--Hb_007885_060 Hb_002601_110 Hb_002601_110 Hb_002820_050--Hb_002601_110 Hb_002876_240 Hb_002876_240 Hb_002820_050--Hb_002876_240 Hb_000094_330--Hb_002876_240 Hb_000094_330--Hb_002820_050 Hb_146673_010 Hb_146673_010 Hb_000094_330--Hb_146673_010 Hb_002820_110 Hb_002820_110 Hb_000094_330--Hb_002820_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39845 1.05669 3.11056 2.40738 2.38027 3.06597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.52333 3.22174 1.57621 2.12766 3.05876

CAGE analysis