Hb_001922_190

Information

Type -
Description -
Location Contig1922: 174142-175074
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05980g
description Chain A family protein
nr
ID P23472.2
description RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]
swissprot
ID P23472
description Hevamine-A OS=Hevea brasiliensis PE=1 SV=2
trembl
ID A0A067JEE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26021 PE=3 SV=1
Gene Ontology
ID GO:0005773
description hevamine-a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 015_I02.ab1: 174342-175098 , 052_H13.ab1: 174322-175098

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_190 0.0 - - RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]
2 Hb_010483_020 0.1302247339 - - latex allergen [Hevea brasiliensis]
3 Hb_002875_080 0.1353240212 - - protein with unknown function [Ricinus communis]
4 Hb_000481_020 0.1399739258 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
5 Hb_000982_070 0.1422686576 - - unnamed protein product [Vitis vinifera]
6 Hb_005433_040 0.1500085926 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
7 Hb_001700_030 0.153978034 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
8 Hb_000220_130 0.1577136703 - - Phosphatidyl serine synthase family protein isoform 1 [Theobroma cacao]
9 Hb_006501_110 0.157863424 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
10 Hb_005147_100 0.1588587043 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002471_070 0.1607413248 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
12 Hb_000295_120 0.1665095203 - - -
13 Hb_009773_020 0.1691562709 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
14 Hb_007766_010 0.1692465514 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
15 Hb_001357_180 0.1719082268 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
16 Hb_000307_140 0.1719189285 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
17 Hb_001143_170 0.172898247 - - nucellin, putative [Ricinus communis]
18 Hb_002030_040 0.1730353784 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
19 Hb_003376_360 0.1744219578 - - PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
20 Hb_001135_080 0.1756784151 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001922_190 Hb_001922_190 Hb_010483_020 Hb_010483_020 Hb_001922_190--Hb_010483_020 Hb_002875_080 Hb_002875_080 Hb_001922_190--Hb_002875_080 Hb_000481_020 Hb_000481_020 Hb_001922_190--Hb_000481_020 Hb_000982_070 Hb_000982_070 Hb_001922_190--Hb_000982_070 Hb_005433_040 Hb_005433_040 Hb_001922_190--Hb_005433_040 Hb_001700_030 Hb_001700_030 Hb_001922_190--Hb_001700_030 Hb_001205_090 Hb_001205_090 Hb_010483_020--Hb_001205_090 Hb_007766_010 Hb_007766_010 Hb_010483_020--Hb_007766_010 Hb_010483_020--Hb_000481_020 Hb_004659_120 Hb_004659_120 Hb_010483_020--Hb_004659_120 Hb_001696_030 Hb_001696_030 Hb_010483_020--Hb_001696_030 Hb_001008_060 Hb_001008_060 Hb_002875_080--Hb_001008_060 Hb_000001_050 Hb_000001_050 Hb_002875_080--Hb_000001_050 Hb_000389_060 Hb_000389_060 Hb_002875_080--Hb_000389_060 Hb_009773_020 Hb_009773_020 Hb_002875_080--Hb_009773_020 Hb_010931_090 Hb_010931_090 Hb_002875_080--Hb_010931_090 Hb_029866_040 Hb_029866_040 Hb_002875_080--Hb_029866_040 Hb_003777_180 Hb_003777_180 Hb_000481_020--Hb_003777_180 Hb_000481_020--Hb_007766_010 Hb_000184_040 Hb_000184_040 Hb_000481_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000481_020--Hb_006120_200 Hb_002681_020 Hb_002681_020 Hb_000481_020--Hb_002681_020 Hb_007919_050 Hb_007919_050 Hb_000481_020--Hb_007919_050 Hb_001135_080 Hb_001135_080 Hb_000982_070--Hb_001135_080 Hb_006501_110 Hb_006501_110 Hb_000982_070--Hb_006501_110 Hb_000982_070--Hb_000481_020 Hb_000907_090 Hb_000907_090 Hb_000982_070--Hb_000907_090 Hb_003126_090 Hb_003126_090 Hb_000982_070--Hb_003126_090 Hb_035273_030 Hb_035273_030 Hb_005433_040--Hb_035273_030 Hb_001105_070 Hb_001105_070 Hb_005433_040--Hb_001105_070 Hb_005433_040--Hb_009773_020 Hb_005433_040--Hb_001135_080 Hb_065525_020 Hb_065525_020 Hb_005433_040--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_005433_040--Hb_002030_040 Hb_004705_100 Hb_004705_100 Hb_001700_030--Hb_004705_100 Hb_000692_220 Hb_000692_220 Hb_001700_030--Hb_000692_220 Hb_033594_150 Hb_033594_150 Hb_001700_030--Hb_033594_150 Hb_001700_030--Hb_001105_070 Hb_007926_060 Hb_007926_060 Hb_001700_030--Hb_007926_060 Hb_001205_150 Hb_001205_150 Hb_001700_030--Hb_001205_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
345.664 46.9417 41.7363 287.558 173.126 107.826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
348.105 236.543 238.635 48.7506 21.7684

CAGE analysis